miRNA display CGI


Results 21 - 40 of 661 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23725 3' -56.6 NC_005261.1 + 132351 0.72 0.532424
Target:  5'- uGCGCagCUUccgccGCgGCGCGCUCGCCg -3'
miRNA:   3'- cCGCGa-GAAaua--UGgCGCGCGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 132133 0.69 0.752872
Target:  5'- cGCGCggCUg---ACCGCccuccuccucgaGCGCgCCGCCg -3'
miRNA:   3'- cCGCGa-GAaauaUGGCG------------CGCG-GGCGG- -5'
23725 3' -56.6 NC_005261.1 + 131929 0.75 0.386226
Target:  5'- uGGCGCgcgCgggaccgcgGUGCC-CGCGCCCGUCu -3'
miRNA:   3'- -CCGCGa--Gaaa------UAUGGcGCGCGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 131818 0.75 0.39458
Target:  5'- cGGCGCgccgccgCUUga---CGCgGCGCCCGCCu -3'
miRNA:   3'- -CCGCGa------GAAauaugGCG-CGCGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 131776 0.76 0.369873
Target:  5'- gGGCGCgccgCUgggccCCGacgcCGCGCCCGCCg -3'
miRNA:   3'- -CCGCGa---GAaauauGGC----GCGCGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 131605 0.72 0.572253
Target:  5'- cGCGCgcgCgcacGUACgCGCgccugGCGCCCGCCg -3'
miRNA:   3'- cCGCGa--Gaaa-UAUG-GCG-----CGCGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 131438 0.69 0.749038
Target:  5'- cGGCGCccccCUUgc-GCCGCGCcucgcgggcgccuCCCGCCu -3'
miRNA:   3'- -CCGCGa---GAAauaUGGCGCGc------------GGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 131198 0.77 0.313587
Target:  5'- cGGCGCggucgccGCCgGCGCGCCCGCg -3'
miRNA:   3'- -CCGCGagaaauaUGG-CGCGCGGGCGg -5'
23725 3' -56.6 NC_005261.1 + 131158 0.68 0.800082
Target:  5'- cGGCGCUCgccgccuucugcUGCCGCaGCgGCUaCGCCc -3'
miRNA:   3'- -CCGCGAGaaau--------AUGGCG-CG-CGG-GCGG- -5'
23725 3' -56.6 NC_005261.1 + 130840 0.8 0.196429
Target:  5'- uGCGCUCaaccuUGCgCGCGCGCCCgGCCg -3'
miRNA:   3'- cCGCGAGaaau-AUG-GCGCGCGGG-CGG- -5'
23725 3' -56.6 NC_005261.1 + 130633 0.69 0.699927
Target:  5'- aGCGCgcggggcGCgCGUGCGCUCGCCg -3'
miRNA:   3'- cCGCGagaaauaUG-GCGCGCGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 130548 0.71 0.622925
Target:  5'- cGCGUUUUaucUGCUGgGCgGCCCGCCg -3'
miRNA:   3'- cCGCGAGAaauAUGGCgCG-CGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 130520 0.75 0.37799
Target:  5'- aGGCGCUg-----GCCgaaGCGCGCCCGCUc -3'
miRNA:   3'- -CCGCGAgaaauaUGG---CGCGCGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 130271 0.69 0.733544
Target:  5'- gGGCGUc-------CCGCGCGCCCccGCCa -3'
miRNA:   3'- -CCGCGagaaauauGGCGCGCGGG--CGG- -5'
23725 3' -56.6 NC_005261.1 + 130117 0.74 0.447069
Target:  5'- uGCGC-CUUggcgagccGCCGCGCGCcguCCGCCg -3'
miRNA:   3'- cCGCGaGAAaua-----UGGCGCGCG---GGCGG- -5'
23725 3' -56.6 NC_005261.1 + 129845 0.72 0.542297
Target:  5'- cGCGCUCcagc-ACCGCGaCGUCgGCCa -3'
miRNA:   3'- cCGCGAGaaauaUGGCGC-GCGGgCGG- -5'
23725 3' -56.6 NC_005261.1 + 129807 0.7 0.67376
Target:  5'- cGCGCUCgc---GCC-CGCGCCCugcGCCc -3'
miRNA:   3'- cCGCGAGaaauaUGGcGCGCGGG---CGG- -5'
23725 3' -56.6 NC_005261.1 + 129204 0.66 0.87683
Target:  5'- uGGCGCagcugcuUCUgcugGUGCgGCGCcucaaguggcucccGCCCaGCCu -3'
miRNA:   3'- -CCGCG-------AGAaa--UAUGgCGCG--------------CGGG-CGG- -5'
23725 3' -56.6 NC_005261.1 + 128839 0.68 0.808039
Target:  5'- cGCGCggCUg---GCCGCcacgGUGcCCCGCCu -3'
miRNA:   3'- cCGCGa-GAaauaUGGCG----CGC-GGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 128714 0.74 0.435365
Target:  5'- aGGCGCgcccgggccCCGCcCGCCCGCCg -3'
miRNA:   3'- -CCGCGagaaauau-GGCGcGCGGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.