miRNA display CGI


Results 41 - 60 of 661 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23725 3' -56.6 NC_005261.1 + 128566 0.69 0.723745
Target:  5'- uGGCGCUCUggGgcCCGguUGCGCUgGCg -3'
miRNA:   3'- -CCGCGAGAaaUauGGC--GCGCGGgCGg -5'
23725 3' -56.6 NC_005261.1 + 127804 0.69 0.750957
Target:  5'- cGGCGCcgCggcggcggGCCGCucGCGCUCGCg -3'
miRNA:   3'- -CCGCGa-Gaaaua---UGGCG--CGCGGGCGg -5'
23725 3' -56.6 NC_005261.1 + 127702 0.7 0.67376
Target:  5'- cGGCGC-CggaggaGCUGCGCgugGCCUGCCu -3'
miRNA:   3'- -CCGCGaGaaaua-UGGCGCG---CGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 127586 0.69 0.713868
Target:  5'- gGGCGCccugggcgUCUUcgggGCCGCGCugaacgcuagcgGCCgGCCg -3'
miRNA:   3'- -CCGCG--------AGAAaua-UGGCGCG------------CGGgCGG- -5'
23725 3' -56.6 NC_005261.1 + 127264 0.73 0.512879
Target:  5'- aGCGCUacg---GCCGgGCccGCCCGCCg -3'
miRNA:   3'- cCGCGAgaaauaUGGCgCG--CGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 127215 0.69 0.732568
Target:  5'- cGGCGCgcggCUUaa-GCCGCGCGCgUcgaaaaaGCCu -3'
miRNA:   3'- -CCGCGa---GAAauaUGGCGCGCGgG-------CGG- -5'
23725 3' -56.6 NC_005261.1 + 127108 0.83 0.141514
Target:  5'- gGGCGCggugacccgcgaUUUUUAUG-CGCGCGCCCGCCc -3'
miRNA:   3'- -CCGCG------------AGAAAUAUgGCGCGCGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 127057 0.7 0.653469
Target:  5'- uGGCGUcguacgggUCcaugGUGCCGC-CGCCgCGCCg -3'
miRNA:   3'- -CCGCG--------AGaaa-UAUGGCGcGCGG-GCGG- -5'
23725 3' -56.6 NC_005261.1 + 126775 0.69 0.713868
Target:  5'- uGGCGCcCac--UACCGCgucuGCGUCUGCCg -3'
miRNA:   3'- -CCGCGaGaaauAUGGCG----CGCGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 126618 0.68 0.78105
Target:  5'- -cCGCUCUUc---CCGCGCGCgcagcuCUGCCa -3'
miRNA:   3'- ccGCGAGAAauauGGCGCGCG------GGCGG- -5'
23725 3' -56.6 NC_005261.1 + 126511 0.79 0.24465
Target:  5'- aGGCGgUCUgccugggcGCC-CGCGCCCGCCg -3'
miRNA:   3'- -CCGCgAGAaaua----UGGcGCGCGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 126468 0.71 0.588394
Target:  5'- cGCGCUCgccucgcgguaGUACCGCGCcGCCaccaGCUg -3'
miRNA:   3'- cCGCGAGaaa--------UAUGGCGCG-CGGg---CGG- -5'
23725 3' -56.6 NC_005261.1 + 126406 0.69 0.710891
Target:  5'- aGGCGCcaagagacuUCGCGCGCCguCGCCa -3'
miRNA:   3'- -CCGCGagaaauau-GGCGCGCGG--GCGG- -5'
23725 3' -56.6 NC_005261.1 + 126050 0.68 0.808039
Target:  5'- aGUGCUCccgcu-CCgGCGCcagccGCCCGCCg -3'
miRNA:   3'- cCGCGAGaaauauGG-CGCG-----CGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 125999 0.66 0.895962
Target:  5'- uGGC-CUCUggagucGUcccguaguugaucgcGCCGCGCGgCCGCg -3'
miRNA:   3'- -CCGcGAGAaa----UA---------------UGGCGCGCgGGCGg -5'
23725 3' -56.6 NC_005261.1 + 125882 0.68 0.771778
Target:  5'- cGGCGCcCUUg--GCUGaagGCGCCUgaGCCa -3'
miRNA:   3'- -CCGCGaGAAauaUGGCg--CGCGGG--CGG- -5'
23725 3' -56.6 NC_005261.1 + 125316 0.69 0.733544
Target:  5'- gGGCGCUCcgcg-GCCuCgGCGUCCGCa -3'
miRNA:   3'- -CCGCGAGaaauaUGGcG-CGCGGGCGg -5'
23725 3' -56.6 NC_005261.1 + 124941 0.7 0.693917
Target:  5'- cGCGCgCgcUGUGCCG-GCGCCCuggaGCCc -3'
miRNA:   3'- cCGCGaGaaAUAUGGCgCGCGGG----CGG- -5'
23725 3' -56.6 NC_005261.1 + 124307 0.68 0.762382
Target:  5'- uGCGCaCUacgcGCagcaGCGCGUCCGCCa -3'
miRNA:   3'- cCGCGaGAaauaUGg---CGCGCGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 124265 0.75 0.39458
Target:  5'- cGGCGC-Cgc----CCGCGCGCCCcgGCCg -3'
miRNA:   3'- -CCGCGaGaaauauGGCGCGCGGG--CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.