miRNA display CGI


Results 61 - 80 of 661 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23725 3' -56.6 NC_005261.1 + 124088 0.68 0.808039
Target:  5'- cGGCGCcCgc-GUAgCGCGCGCaCaggGCCg -3'
miRNA:   3'- -CCGCGaGaaaUAUgGCGCGCG-Gg--CGG- -5'
23725 3' -56.6 NC_005261.1 + 124013 0.71 0.63311
Target:  5'- aGCGCUCguu-UGCCGUGUaGCCgggCGCCu -3'
miRNA:   3'- cCGCGAGaaauAUGGCGCG-CGG---GCGG- -5'
23725 3' -56.6 NC_005261.1 + 123902 0.69 0.713868
Target:  5'- aGGcCGCcgCUgugggGUGCggcccgagcaggUGCGCGCCCGCUa -3'
miRNA:   3'- -CC-GCGa-GAaa---UAUG------------GCGCGCGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 123692 0.71 0.622925
Target:  5'- cGGCGCUCagcguggGCCGCGUaCUCgGCCa -3'
miRNA:   3'- -CCGCGAGaaaua--UGGCGCGcGGG-CGG- -5'
23725 3' -56.6 NC_005261.1 + 123180 0.66 0.869581
Target:  5'- gGGCGUgguggCUggUGUgggcggacccagccGCCGCGUaagcgcgGCCUGCCg -3'
miRNA:   3'- -CCGCGa----GAa-AUA--------------UGGCGCG-------CGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 122796 0.88 0.064331
Target:  5'- cGGCGUcCUUagagaGCCGCGCGCCCGCCa -3'
miRNA:   3'- -CCGCGaGAAaua--UGGCGCGCGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 122691 0.71 0.643294
Target:  5'- uGCGC-CUgcuccaucGCCGCGcCGCCgGCCg -3'
miRNA:   3'- cCGCGaGAaaua----UGGCGC-GCGGgCGG- -5'
23725 3' -56.6 NC_005261.1 + 122337 0.68 0.758591
Target:  5'- uGGCGCUCgcagagcucgccUGgcgGCCGCG-GCUCGCg -3'
miRNA:   3'- -CCGCGAGaa----------AUa--UGGCGCgCGGGCGg -5'
23725 3' -56.6 NC_005261.1 + 122155 0.68 0.78105
Target:  5'- cGGCcgacgccaGCUCg----ACCGCggccacgaugGCGCCCGUCa -3'
miRNA:   3'- -CCG--------CGAGaaauaUGGCG----------CGCGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 121963 0.71 0.612747
Target:  5'- --aGCUCgccGUGCCGCGCuccaGCgCCGCCc -3'
miRNA:   3'- ccgCGAGaaaUAUGGCGCG----CG-GGCGG- -5'
23725 3' -56.6 NC_005261.1 + 121906 0.67 0.823565
Target:  5'- aGuaGCUCgucugcgcGCCGUGCGC-CGCCa -3'
miRNA:   3'- -CcgCGAGaaaua---UGGCGCGCGgGCGG- -5'
23725 3' -56.6 NC_005261.1 + 121850 0.66 0.872506
Target:  5'- cGGCGC-CagcagcCCGCgGCuCCCGCCg -3'
miRNA:   3'- -CCGCGaGaaauauGGCG-CGcGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 121809 0.66 0.86513
Target:  5'- gGGCGCguggCUgggcuCUGCGgGC-CGCCg -3'
miRNA:   3'- -CCGCGa---GAaauauGGCGCgCGgGCGG- -5'
23725 3' -56.6 NC_005261.1 + 121601 0.66 0.872506
Target:  5'- cGGCcucGUUCUcgUAcACCGcCGCcuCCCGCCg -3'
miRNA:   3'- -CCG---CGAGAa-AUaUGGC-GCGc-GGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 121381 0.7 0.683859
Target:  5'- aGGCGC-CccgcgGCgGCgGCGCCUGCCc -3'
miRNA:   3'- -CCGCGaGaaauaUGgCG-CGCGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 121174 0.67 0.820161
Target:  5'- gGGCGCUCggugcacgggGCCGgggcCGgGCCCgggGCCg -3'
miRNA:   3'- -CCGCGAGaaaua-----UGGC----GCgCGGG---CGG- -5'
23725 3' -56.6 NC_005261.1 + 121079 0.69 0.733544
Target:  5'- cGGCGC-Cggcg-GCCGCcaGCGCCUccagGCCg -3'
miRNA:   3'- -CCGCGaGaaauaUGGCG--CGCGGG----CGG- -5'
23725 3' -56.6 NC_005261.1 + 120241 0.68 0.808039
Target:  5'- aGCGCcgCUUc--GCCGCGgcUGCCaCGCCg -3'
miRNA:   3'- cCGCGa-GAAauaUGGCGC--GCGG-GCGG- -5'
23725 3' -56.6 NC_005261.1 + 120002 0.76 0.346245
Target:  5'- gGGCGCcggCUacgcgGCCGUGUGCCgCGCCg -3'
miRNA:   3'- -CCGCGa--GAaaua-UGGCGCGCGG-GCGG- -5'
23725 3' -56.6 NC_005261.1 + 119932 0.71 0.601569
Target:  5'- aGCGCaaggucgugaccgUCacgacGUACCGCGCaCCCGCCg -3'
miRNA:   3'- cCGCG-------------AGaaa--UAUGGCGCGcGGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.