miRNA display CGI


Results 1 - 20 of 661 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23725 3' -56.6 NC_005261.1 + 81706 0.66 0.895962
Target:  5'- cGGCGCcguUCg--GU-CCGCGCGCagcagcggcacgcguCCGCa -3'
miRNA:   3'- -CCGCG---AGaaaUAuGGCGCGCG---------------GGCGg -5'
23725 3' -56.6 NC_005261.1 + 130840 0.8 0.196429
Target:  5'- uGCGCUCaaccuUGCgCGCGCGCCCgGCCg -3'
miRNA:   3'- cCGCGAGaaau-AUG-GCGCGCGGG-CGG- -5'
23725 3' -56.6 NC_005261.1 + 1953 0.8 0.196429
Target:  5'- cGGCGCgcag-GUACaCGUGCGCCUGCCc -3'
miRNA:   3'- -CCGCGagaaaUAUG-GCGCGCGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 12328 0.8 0.201347
Target:  5'- gGGCGCgcgCUUg--GCCgGCGCGgCCGCCg -3'
miRNA:   3'- -CCGCGa--GAAauaUGG-CGCGCgGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 133826 0.8 0.211505
Target:  5'- aGGCGCUgCgcg--GCCGCGUGCgCGCCg -3'
miRNA:   3'- -CCGCGA-GaaauaUGGCGCGCGgGCGG- -5'
23725 3' -56.6 NC_005261.1 + 21869 0.79 0.227567
Target:  5'- cGCGCUCgcgaa--CGCGCGCCCGCg -3'
miRNA:   3'- cCGCGAGaaauaugGCGCGCGGGCGg -5'
23725 3' -56.6 NC_005261.1 + 77464 0.79 0.233147
Target:  5'- gGGCGCggCUgca-GCCGCGCccccGCCCGCCc -3'
miRNA:   3'- -CCGCGa-GAaauaUGGCGCG----CGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 101579 0.79 0.233147
Target:  5'- cGGCGCgcgCcgUGgccuCCGCGCGCgCCGCCu -3'
miRNA:   3'- -CCGCGa--GaaAUau--GGCGCGCG-GGCGG- -5'
23725 3' -56.6 NC_005261.1 + 126511 0.79 0.24465
Target:  5'- aGGCGgUCUgccugggcGCC-CGCGCCCGCCg -3'
miRNA:   3'- -CCGCgAGAaaua----UGGcGCGCGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 10535 0.8 0.196429
Target:  5'- cGCGCUCgcUGUcGCCcccgGCGCGCCUGCCg -3'
miRNA:   3'- cCGCGAGaaAUA-UGG----CGCGCGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 54037 0.8 0.196429
Target:  5'- cGCGCUCcgUGUACCGCGCGCggugCGCUu -3'
miRNA:   3'- cCGCGAGaaAUAUGGCGCGCGg---GCGG- -5'
23725 3' -56.6 NC_005261.1 + 104015 0.81 0.182299
Target:  5'- uGGCGCgcgCgcUGUACUGCGCGCCgCGCa -3'
miRNA:   3'- -CCGCGa--GaaAUAUGGCGCGCGG-GCGg -5'
23725 3' -56.6 NC_005261.1 + 122796 0.88 0.064331
Target:  5'- cGGCGUcCUUagagaGCCGCGCGCCCGCCa -3'
miRNA:   3'- -CCGCGaGAAaua--UGGCGCGCGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 101831 0.86 0.090901
Target:  5'- cGCGCggCUgaucuccGCCGCGCGCCCGCCg -3'
miRNA:   3'- cCGCGa-GAaaua---UGGCGCGCGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 30266 0.84 0.110966
Target:  5'- cGGCGCggcggc--CCGCGCGCCCGCCu -3'
miRNA:   3'- -CCGCGagaaauauGGCGCGCGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 69591 0.84 0.11509
Target:  5'- cGGagcaGCUCacggccUUcgACCGCGCGCCCGCCg -3'
miRNA:   3'- -CCg---CGAGa-----AAuaUGGCGCGCGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 117562 0.83 0.131009
Target:  5'- cGUGUUCUUUuucUGCCGCcccGCGCCCGCCg -3'
miRNA:   3'- cCGCGAGAAAu--AUGGCG---CGCGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 127108 0.83 0.141514
Target:  5'- gGGCGCggugacccgcgaUUUUUAUG-CGCGCGCCCGCCc -3'
miRNA:   3'- -CCGCG------------AGAAAUAUgGCGCGCGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 20858 0.82 0.156719
Target:  5'- uGGCgGCUCUUgc-GCCGCGgGCCgGCCa -3'
miRNA:   3'- -CCG-CGAGAAauaUGGCGCgCGGgCGG- -5'
23725 3' -56.6 NC_005261.1 + 118642 0.82 0.159932
Target:  5'- cGGCGCUCUgggccccggGCCGCGCGCUCGg- -3'
miRNA:   3'- -CCGCGAGAaaua-----UGGCGCGCGGGCgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.