miRNA display CGI


Results 41 - 60 of 661 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23725 3' -56.6 NC_005261.1 + 117562 0.83 0.131009
Target:  5'- cGUGUUCUUUuucUGCCGCcccGCGCCCGCCg -3'
miRNA:   3'- cCGCGAGAAAu--AUGGCG---CGCGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 69591 0.84 0.11509
Target:  5'- cGGagcaGCUCacggccUUcgACCGCGCGCCCGCCg -3'
miRNA:   3'- -CCg---CGAGa-----AAuaUGGCGCGCGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 30266 0.84 0.110966
Target:  5'- cGGCGCggcggc--CCGCGCGCCCGCCu -3'
miRNA:   3'- -CCGCGagaaauauGGCGCGCGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 101831 0.86 0.090901
Target:  5'- cGCGCggCUgaucuccGCCGCGCGCCCGCCg -3'
miRNA:   3'- cCGCGa-GAaaua---UGGCGCGCGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 122796 0.88 0.064331
Target:  5'- cGGCGUcCUUagagaGCCGCGCGCCCGCCa -3'
miRNA:   3'- -CCGCGaGAAaua--UGGCGCGCGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 12328 0.8 0.201347
Target:  5'- gGGCGCgcgCUUg--GCCgGCGCGgCCGCCg -3'
miRNA:   3'- -CCGCGa--GAAauaUGG-CGCGCgGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 133826 0.8 0.211505
Target:  5'- aGGCGCUgCgcg--GCCGCGUGCgCGCCg -3'
miRNA:   3'- -CCGCGA-GaaauaUGGCGCGCGgGCGG- -5'
23725 3' -56.6 NC_005261.1 + 10376 0.78 0.281995
Target:  5'- cGCGCgcgCUgc--GCCGCGCGCUCGUCg -3'
miRNA:   3'- cCGCGa--GAaauaUGGCGCGCGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 91483 0.78 0.281995
Target:  5'- cGGCGC-CgccgcgGCCGC-CGCCCGCCc -3'
miRNA:   3'- -CCGCGaGaaaua-UGGCGcGCGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 118849 0.78 0.281995
Target:  5'- cGGCGCggagg--GCgGCGCGCCCGCg -3'
miRNA:   3'- -CCGCGagaaauaUGgCGCGCGGGCGg -5'
23725 3' -56.6 NC_005261.1 + 111626 0.78 0.269067
Target:  5'- cGGCGC-CgugccGCCGC-CGCCCGCCg -3'
miRNA:   3'- -CCGCGaGaaauaUGGCGcGCGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 108881 0.78 0.269067
Target:  5'- gGGUGgaCgacg-GCCGCGCuGCCCGCCg -3'
miRNA:   3'- -CCGCgaGaaauaUGGCGCG-CGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 95886 0.78 0.262784
Target:  5'- gGGCGCccUCUUa--ACgCGCGCGCCCGCg -3'
miRNA:   3'- -CCGCG--AGAAauaUG-GCGCGCGGGCGg -5'
23725 3' -56.6 NC_005261.1 + 89418 0.78 0.254189
Target:  5'- cGGCGCgugcgcgGCCGCcgggcuccccGCGCCCGCCg -3'
miRNA:   3'- -CCGCGagaaauaUGGCG----------CGCGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 133623 0.79 0.250576
Target:  5'- uGGCGCUgUgg--GCCGCGCucGCCgCGCCg -3'
miRNA:   3'- -CCGCGAgAaauaUGGCGCG--CGG-GCGG- -5'
23725 3' -56.6 NC_005261.1 + 109038 0.79 0.250576
Target:  5'- uGGCGCgca----GCCGCGCGgCCGCCa -3'
miRNA:   3'- -CCGCGagaaauaUGGCGCGCgGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 126511 0.79 0.24465
Target:  5'- aGGCGgUCUgccugggcGCC-CGCGCCCGCCg -3'
miRNA:   3'- -CCGCgAGAaaua----UGGcGCGCGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 101579 0.79 0.233147
Target:  5'- cGGCGCgcgCcgUGgccuCCGCGCGCgCCGCCu -3'
miRNA:   3'- -CCGCGa--GaaAUau--GGCGCGCG-GGCGG- -5'
23725 3' -56.6 NC_005261.1 + 77464 0.79 0.233147
Target:  5'- gGGCGCggCUgca-GCCGCGCccccGCCCGCCc -3'
miRNA:   3'- -CCGCGa-GAaauaUGGCGCG----CGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 21869 0.79 0.227567
Target:  5'- cGCGCUCgcgaa--CGCGCGCCCGCg -3'
miRNA:   3'- cCGCGAGaaauaugGCGCGCGGGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.