Results 81 - 100 of 661 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23725 | 3' | -56.6 | NC_005261.1 | + | 2388 | 0.77 | 0.316457 |
Target: 5'- cGGCGCgCUggcgGCgaGCGCGCCCGCg -3' miRNA: 3'- -CCGCGaGAaauaUGg-CGCGCGGGCGg -5' |
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23725 | 3' | -56.6 | NC_005261.1 | + | 1323 | 0.77 | 0.323719 |
Target: 5'- cGCGCUCcgggacGCCGcCGCGCCgCGCCu -3' miRNA: 3'- cCGCGAGaaaua-UGGC-GCGCGG-GCGG- -5' |
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23725 | 3' | -56.6 | NC_005261.1 | + | 59147 | 0.76 | 0.335595 |
Target: 5'- cGGCGCgccccggGCgCGCgGCGCCCGCCc -3' miRNA: 3'- -CCGCGagaaauaUG-GCG-CGCGGGCGG- -5' |
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23725 | 3' | -56.6 | NC_005261.1 | + | 64119 | 0.76 | 0.338614 |
Target: 5'- gGGCGg-Cac-GUGCCGCGCGgCCGCCa -3' miRNA: 3'- -CCGCgaGaaaUAUGGCGCGCgGGCGG- -5' |
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23725 | 3' | -56.6 | NC_005261.1 | + | 72949 | 0.76 | 0.338614 |
Target: 5'- cGGCGC-Cg--GcACCGgcuCGCGCCCGCCg -3' miRNA: 3'- -CCGCGaGaaaUaUGGC---GCGCGGGCGG- -5' |
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23725 | 3' | -56.6 | NC_005261.1 | + | 104727 | 0.76 | 0.338614 |
Target: 5'- gGGCGCg--UcGUGCCGCGUGCgCgCGCCg -3' miRNA: 3'- -CCGCGagaAaUAUGGCGCGCG-G-GCGG- -5' |
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23725 | 3' | -56.6 | NC_005261.1 | + | 46738 | 0.76 | 0.338614 |
Target: 5'- cGGCGCgugcacGUGCCGCa-GCCCGCCg -3' miRNA: 3'- -CCGCGagaaa-UAUGGCGcgCGGGCGG- -5' |
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23725 | 3' | -56.6 | NC_005261.1 | + | 131198 | 0.77 | 0.313587 |
Target: 5'- cGGCGCggucgccGCCgGCGCGCCCGCg -3' miRNA: 3'- -CCGCGagaaauaUGG-CGCGCGGGCGg -5' |
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23725 | 3' | -56.6 | NC_005261.1 | + | 30022 | 0.77 | 0.310026 |
Target: 5'- cGGUGCUCUcggcugcagcggGCCGCG-GCCUGCCg -3' miRNA: 3'- -CCGCGAGAaaua--------UGGCGCgCGGGCGG- -5' |
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23725 | 3' | -56.6 | NC_005261.1 | + | 29186 | 0.77 | 0.309318 |
Target: 5'- cGGCGCcCUc---GCCGCgGCGCCCGCg -3' miRNA: 3'- -CCGCGaGAaauaUGGCG-CGCGGGCGg -5' |
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23725 | 3' | -56.6 | NC_005261.1 | + | 118849 | 0.78 | 0.281995 |
Target: 5'- cGGCGCggagg--GCgGCGCGCCCGCg -3' miRNA: 3'- -CCGCGagaaauaUGgCGCGCGGGCGg -5' |
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23725 | 3' | -56.6 | NC_005261.1 | + | 91483 | 0.78 | 0.281995 |
Target: 5'- cGGCGC-CgccgcgGCCGC-CGCCCGCCc -3' miRNA: 3'- -CCGCGaGaaaua-UGGCGcGCGGGCGG- -5' |
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23725 | 3' | -56.6 | NC_005261.1 | + | 10376 | 0.78 | 0.281995 |
Target: 5'- cGCGCgcgCUgc--GCCGCGCGCUCGUCg -3' miRNA: 3'- cCGCGa--GAaauaUGGCGCGCGGGCGG- -5' |
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23725 | 3' | -56.6 | NC_005261.1 | + | 115842 | 0.78 | 0.288642 |
Target: 5'- gGGCGCg--UUGgcCCGCGCGgccCCCGCCg -3' miRNA: 3'- -CCGCGagaAAUauGGCGCGC---GGGCGG- -5' |
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23725 | 3' | -56.6 | NC_005261.1 | + | 9726 | 0.78 | 0.288642 |
Target: 5'- aGCGCUCc----GCCGCGacuaGCCCGCCc -3' miRNA: 3'- cCGCGAGaaauaUGGCGCg---CGGGCGG- -5' |
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23725 | 3' | -56.6 | NC_005261.1 | + | 101711 | 0.78 | 0.288642 |
Target: 5'- aGCGCUCcagcUGcGCCaGCGCGCCCGCg -3' miRNA: 3'- cCGCGAGaa--AUaUGG-CGCGCGGGCGg -5' |
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23725 | 3' | -56.6 | NC_005261.1 | + | 2266 | 0.77 | 0.295411 |
Target: 5'- cGGCGCUCguccucGCCGgGCGgCgCCGCCa -3' miRNA: 3'- -CCGCGAGaaaua-UGGCgCGC-G-GGCGG- -5' |
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23725 | 3' | -56.6 | NC_005261.1 | + | 103445 | 0.77 | 0.295411 |
Target: 5'- cGCGcCUCgcggUcgGCCGcCGCGCCCGUCg -3' miRNA: 3'- cCGC-GAGaa--AuaUGGC-GCGCGGGCGG- -5' |
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23725 | 3' | -56.6 | NC_005261.1 | + | 31797 | 0.77 | 0.295411 |
Target: 5'- cGGCGCag--UGcGCCGCGCGCUgGCCu -3' miRNA: 3'- -CCGCGagaaAUaUGGCGCGCGGgCGG- -5' |
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23725 | 3' | -56.6 | NC_005261.1 | + | 116642 | 0.77 | 0.300915 |
Target: 5'- gGGCGaggc-----CCGCGCGCCCGCCg -3' miRNA: 3'- -CCGCgagaaauauGGCGCGCGGGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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