miRNA display CGI


Results 1 - 20 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23725 5' -49.9 NC_005261.1 + 99339 0.66 0.996866
Target:  5'- aCCGGCGcgcccagcAGCAgCGCGCACgUGACGa- -3'
miRNA:   3'- -GGCCGUu-------UUGU-GUGUGUGaGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 80302 0.66 0.996866
Target:  5'- gUGGCGuugAAGCGCucacgguagACGCGCUCGACc-- -3'
miRNA:   3'- gGCCGU---UUUGUG---------UGUGUGAGCUGcau -5'
23725 5' -49.9 NC_005261.1 + 61081 0.66 0.996866
Target:  5'- gCCGGCGcu-CACGgGCAgCUCGGCc-- -3'
miRNA:   3'- -GGCCGUuuuGUGUgUGU-GAGCUGcau -5'
23725 5' -49.9 NC_005261.1 + 70817 0.66 0.996866
Target:  5'- gCCGGCGGcccCGgGCGCGC-CGGCGc- -3'
miRNA:   3'- -GGCCGUUuu-GUgUGUGUGaGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 133243 0.66 0.996866
Target:  5'- aUGGCGGAGCACuaccCGCAggCGGCGc- -3'
miRNA:   3'- gGCCGUUUUGUGu---GUGUgaGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 26120 0.66 0.996303
Target:  5'- gCCGGguAAGCAgGCGCGCgguaCGAUc-- -3'
miRNA:   3'- -GGCCguUUUGUgUGUGUGa---GCUGcau -5'
23725 5' -49.9 NC_005261.1 + 87501 0.66 0.996303
Target:  5'- gCUGGC---GCGCAgGCGCUCGccgcCGUGg -3'
miRNA:   3'- -GGCCGuuuUGUGUgUGUGAGCu---GCAU- -5'
23725 5' -49.9 NC_005261.1 + 87093 0.66 0.996303
Target:  5'- gCCGuGCAGcAGCGCGCAgaGCgCGGCGUu -3'
miRNA:   3'- -GGC-CGUU-UUGUGUGUg-UGaGCUGCAu -5'
23725 5' -49.9 NC_005261.1 + 135007 0.66 0.996303
Target:  5'- cCUGGCGcggcGGGCcCGCACGCggccgCGGCGg- -3'
miRNA:   3'- -GGCCGU----UUUGuGUGUGUGa----GCUGCau -5'
23725 5' -49.9 NC_005261.1 + 108288 0.66 0.996303
Target:  5'- uCCGGCGuuGCGCuCGCcuGCaCGGCGUc -3'
miRNA:   3'- -GGCCGUuuUGUGuGUG--UGaGCUGCAu -5'
23725 5' -49.9 NC_005261.1 + 75507 0.66 0.996303
Target:  5'- -gGGCGcuGGAgGCGCACGC-CGugGUc -3'
miRNA:   3'- ggCCGU--UUUgUGUGUGUGaGCugCAu -5'
23725 5' -49.9 NC_005261.1 + 67111 0.66 0.996303
Target:  5'- gCgGGCG--GCGCGCGCAgUgCGGCGg- -3'
miRNA:   3'- -GgCCGUuuUGUGUGUGUgA-GCUGCau -5'
23725 5' -49.9 NC_005261.1 + 16104 0.66 0.996303
Target:  5'- aCCGGCGGcggcCACGCACGCgaucaccgCGGCc-- -3'
miRNA:   3'- -GGCCGUUuu--GUGUGUGUGa-------GCUGcau -5'
23725 5' -49.9 NC_005261.1 + 62933 0.66 0.996303
Target:  5'- aCCGGCAGgcAGCcC-CGCAC-CGGCGa- -3'
miRNA:   3'- -GGCCGUU--UUGuGuGUGUGaGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 35151 0.66 0.996303
Target:  5'- gCGGCGcAAGCACGCGCAUgcgGACc-- -3'
miRNA:   3'- gGCCGU-UUUGUGUGUGUGag-CUGcau -5'
23725 5' -49.9 NC_005261.1 + 29347 0.66 0.996303
Target:  5'- uUCGGCGGcGCGgGCgACACUCG-CGa- -3'
miRNA:   3'- -GGCCGUUuUGUgUG-UGUGAGCuGCau -5'
23725 5' -49.9 NC_005261.1 + 39212 0.66 0.995927
Target:  5'- aCCGGUAGccgccauggcccuCGCGCGCGC-CGGCGa- -3'
miRNA:   3'- -GGCCGUUuu-----------GUGUGUGUGaGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 49302 0.66 0.995927
Target:  5'- gCGGCGguGAGCGcCGCGCagcccucgagccggaACUCGACGc- -3'
miRNA:   3'- gGCCGU--UUUGU-GUGUG---------------UGAGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 107867 0.66 0.995659
Target:  5'- gCCGGCc--GCcCGCGCGCUCG-CGc- -3'
miRNA:   3'- -GGCCGuuuUGuGUGUGUGAGCuGCau -5'
23725 5' -49.9 NC_005261.1 + 56117 0.66 0.995659
Target:  5'- gCGGCgGGAGCGCGC-CGCagGGCGg- -3'
miRNA:   3'- gGCCG-UUUUGUGUGuGUGagCUGCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.