Results 21 - 40 of 186 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23725 | 5' | -49.9 | NC_005261.1 | + | 49223 | 0.66 | 0.994096 |
Target: 5'- gCCGGCGcccAGCGCGCGCAggUCGGCc-- -3' miRNA: 3'- -GGCCGUu--UUGUGUGUGUg-AGCUGcau -5' |
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23725 | 5' | -49.9 | NC_005261.1 | + | 104203 | 0.66 | 0.994926 |
Target: 5'- aCGGCGuccAGGCGCuCGCGCgCGGCGc- -3' miRNA: 3'- gGCCGU---UUUGUGuGUGUGaGCUGCau -5' |
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23725 | 5' | -49.9 | NC_005261.1 | + | 95645 | 0.66 | 0.994096 |
Target: 5'- -gGGCGAgcgcGACGCGCGgCGCcgCGACGg- -3' miRNA: 3'- ggCCGUU----UUGUGUGU-GUGa-GCUGCau -5' |
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23725 | 5' | -49.9 | NC_005261.1 | + | 45600 | 0.66 | 0.994926 |
Target: 5'- aCGGCGAucUAC-CACAC-CGGCGg- -3' miRNA: 3'- gGCCGUUuuGUGuGUGUGaGCUGCau -5' |
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23725 | 5' | -49.9 | NC_005261.1 | + | 16104 | 0.66 | 0.996303 |
Target: 5'- aCCGGCGGcggcCACGCACGCgaucaccgCGGCc-- -3' miRNA: 3'- -GGCCGUUuu--GUGUGUGUGa-------GCUGcau -5' |
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23725 | 5' | -49.9 | NC_005261.1 | + | 57420 | 0.66 | 0.994926 |
Target: 5'- gCCGGCGccgcgagcccaGGAUGCGCACcCgcgCGACGg- -3' miRNA: 3'- -GGCCGU-----------UUUGUGUGUGuGa--GCUGCau -5' |
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23725 | 5' | -49.9 | NC_005261.1 | + | 83656 | 0.66 | 0.995659 |
Target: 5'- gCGGCGugaggcGGACGCGCGC-CUgGGCGc- -3' miRNA: 3'- gGCCGU------UUUGUGUGUGuGAgCUGCau -5' |
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23725 | 5' | -49.9 | NC_005261.1 | + | 101104 | 0.66 | 0.994096 |
Target: 5'- gCGGCc--GCGCGCGC-CUUGGCGc- -3' miRNA: 3'- gGCCGuuuUGUGUGUGuGAGCUGCau -5' |
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23725 | 5' | -49.9 | NC_005261.1 | + | 91915 | 0.66 | 0.994926 |
Target: 5'- cCCGGCGcaccacGAGCACGaacaucgucugcCACACgugggCGACGa- -3' miRNA: 3'- -GGCCGU------UUUGUGU------------GUGUGa----GCUGCau -5' |
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23725 | 5' | -49.9 | NC_005261.1 | + | 112421 | 0.66 | 0.993827 |
Target: 5'- aCgGGCAucugcguguacaucGAGCcCugGCACUgCGACGUGc -3' miRNA: 3'- -GgCCGU--------------UUUGuGugUGUGA-GCUGCAU- -5' |
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23725 | 5' | -49.9 | NC_005261.1 | + | 87409 | 0.66 | 0.995659 |
Target: 5'- aCGGCGccgucGACGgGCGCGC-CGGCGa- -3' miRNA: 3'- gGCCGUu----UUGUgUGUGUGaGCUGCau -5' |
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23725 | 5' | -49.9 | NC_005261.1 | + | 1695 | 0.66 | 0.994007 |
Target: 5'- gCGGCA--GCACGCGCugccgguACUCGcGCGg- -3' miRNA: 3'- gGCCGUuuUGUGUGUG-------UGAGC-UGCau -5' |
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23725 | 5' | -49.9 | NC_005261.1 | + | 46812 | 0.66 | 0.994096 |
Target: 5'- gCGcGCGGAugGCGCGCGCcaggCGcGCGUGc -3' miRNA: 3'- gGC-CGUUUugUGUGUGUGa---GC-UGCAU- -5' |
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23725 | 5' | -49.9 | NC_005261.1 | + | 31874 | 0.66 | 0.994096 |
Target: 5'- cCCGGCGccuuCGCGCGCGC-CGAgGc- -3' miRNA: 3'- -GGCCGUuuu-GUGUGUGUGaGCUgCau -5' |
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23725 | 5' | -49.9 | NC_005261.1 | + | 4381 | 0.66 | 0.994926 |
Target: 5'- gCCGcCGAAGCGCACGCGgcCgggCGGCGg- -3' miRNA: 3'- -GGCcGUUUUGUGUGUGU--Ga--GCUGCau -5' |
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23725 | 5' | -49.9 | NC_005261.1 | + | 75507 | 0.66 | 0.996303 |
Target: 5'- -gGGCGcuGGAgGCGCACGC-CGugGUc -3' miRNA: 3'- ggCCGU--UUUgUGUGUGUGaGCugCAu -5' |
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23725 | 5' | -49.9 | NC_005261.1 | + | 118144 | 0.66 | 0.994926 |
Target: 5'- nCCGGCuc-GCGCAgACGCUgGcCGUc -3' miRNA: 3'- -GGCCGuuuUGUGUgUGUGAgCuGCAu -5' |
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23725 | 5' | -49.9 | NC_005261.1 | + | 100957 | 0.66 | 0.994096 |
Target: 5'- aCGGC---GCGCGCGguCUCGugGa- -3' miRNA: 3'- gGCCGuuuUGUGUGUguGAGCugCau -5' |
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23725 | 5' | -49.9 | NC_005261.1 | + | 84268 | 0.66 | 0.994096 |
Target: 5'- cCCGGCAugGCGCAgGugcCGC-CGGCGg- -3' miRNA: 3'- -GGCCGUuuUGUGUgU---GUGaGCUGCau -5' |
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23725 | 5' | -49.9 | NC_005261.1 | + | 102560 | 0.66 | 0.994926 |
Target: 5'- cCCGGC-GGACAC-CGC-CUCGcCGUc -3' miRNA: 3'- -GGCCGuUUUGUGuGUGuGAGCuGCAu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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