miRNA display CGI


Results 41 - 60 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23725 5' -49.9 NC_005261.1 + 35151 0.66 0.996303
Target:  5'- gCGGCGcAAGCACGCGCAUgcgGACc-- -3'
miRNA:   3'- gGCCGU-UUUGUGUGUGUGag-CUGcau -5'
23725 5' -49.9 NC_005261.1 + 99339 0.66 0.996866
Target:  5'- aCCGGCGcgcccagcAGCAgCGCGCACgUGACGa- -3'
miRNA:   3'- -GGCCGUu-------UUGU-GUGUGUGaGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 132608 0.67 0.988172
Target:  5'- cCCGGCGAGccgccaggggGCGCugGCGC-CGAgGa- -3'
miRNA:   3'- -GGCCGUUU----------UGUGugUGUGaGCUgCau -5'
23725 5' -49.9 NC_005261.1 + 73761 0.67 0.989624
Target:  5'- aCGGCcgcuucuacGAGGCGCugGC-CUgCGACGUGc -3'
miRNA:   3'- gGCCG---------UUUUGUGugUGuGA-GCUGCAU- -5'
23725 5' -49.9 NC_005261.1 + 70885 0.67 0.989624
Target:  5'- gCCGGCGGuGCACAUggccguGCACUUGcGCGc- -3'
miRNA:   3'- -GGCCGUUuUGUGUG------UGUGAGC-UGCau -5'
23725 5' -49.9 NC_005261.1 + 70230 0.67 0.989624
Target:  5'- uUGGCGccGCGCGCAaACUCGACc-- -3'
miRNA:   3'- gGCCGUuuUGUGUGUgUGAGCUGcau -5'
23725 5' -49.9 NC_005261.1 + 120079 0.67 0.988172
Target:  5'- aCGGCuaccccgugGAGGCucgGCACGCGCgCGACGUc -3'
miRNA:   3'- gGCCG---------UUUUG---UGUGUGUGaGCUGCAu -5'
23725 5' -49.9 NC_005261.1 + 19324 0.67 0.989624
Target:  5'- gCGGCAGucguAGCGCGCACgugccagcaGCUCGGgGg- -3'
miRNA:   3'- gGCCGUU----UUGUGUGUG---------UGAGCUgCau -5'
23725 5' -49.9 NC_005261.1 + 89087 0.67 0.988172
Target:  5'- aCCGGCugcggcccGGGCGCGCugGCgCGcGCGUGg -3'
miRNA:   3'- -GGCCGu-------UUUGUGUGugUGaGC-UGCAU- -5'
23725 5' -49.9 NC_005261.1 + 108228 0.67 0.992109
Target:  5'- uCCaGCAugGCGCACGUGCcCGGCGUGa -3'
miRNA:   3'- -GGcCGUuuUGUGUGUGUGaGCUGCAU- -5'
23725 5' -49.9 NC_005261.1 + 117070 0.67 0.99316
Target:  5'- cCUGGUuAAGCACGa--GCUCGGCGa- -3'
miRNA:   3'- -GGCCGuUUUGUGUgugUGAGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 125707 0.67 0.99316
Target:  5'- cCCGGCGAcGGCcgcCGCGgGCUCGGCu-- -3'
miRNA:   3'- -GGCCGUU-UUGu--GUGUgUGAGCUGcau -5'
23725 5' -49.9 NC_005261.1 + 54493 0.67 0.990934
Target:  5'- gCGGCAggcgcAAACGCAgGCGCccuccggCGACGg- -3'
miRNA:   3'- gGCCGU-----UUUGUGUgUGUGa------GCUGCau -5'
23725 5' -49.9 NC_005261.1 + 20314 0.67 0.992109
Target:  5'- aCGGCGAcugggccccgAGC-CGCGCACgagCGACGc- -3'
miRNA:   3'- gGCCGUU----------UUGuGUGUGUGa--GCUGCau -5'
23725 5' -49.9 NC_005261.1 + 135772 0.67 0.990934
Target:  5'- uCCGGCGcaGAGCGCGugcCGCugUCGGagGUGa -3'
miRNA:   3'- -GGCCGU--UUUGUGU---GUGugAGCUg-CAU- -5'
23725 5' -49.9 NC_005261.1 + 62463 0.67 0.99316
Target:  5'- gCGGCgGAAGCAgGCACAC-CG-CGUc -3'
miRNA:   3'- gGCCG-UUUUGUgUGUGUGaGCuGCAu -5'
23725 5' -49.9 NC_005261.1 + 118494 0.67 0.99316
Target:  5'- gCGGCGcugcGGACccugGCGC-CGCUCGGCGa- -3'
miRNA:   3'- gGCCGU----UUUG----UGUGuGUGAGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 55060 0.67 0.992857
Target:  5'- gCCGGCGAGcucggccgccgaagGCAUGCGCagACUCG-CGUc -3'
miRNA:   3'- -GGCCGUUU--------------UGUGUGUG--UGAGCuGCAu -5'
23725 5' -49.9 NC_005261.1 + 130986 0.67 0.993548
Target:  5'- cCCGGCGAAaagacccuggugcugGC-CACGCGCUUcuACGUGu -3'
miRNA:   3'- -GGCCGUUU---------------UGuGUGUGUGAGc-UGCAU- -5'
23725 5' -49.9 NC_005261.1 + 16159 0.67 0.992109
Target:  5'- aCCGGCAGGGCaguaggggGCGCGgGCgUGGCGg- -3'
miRNA:   3'- -GGCCGUUUUG--------UGUGUgUGaGCUGCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.