miRNA display CGI


Results 61 - 80 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23725 5' -49.9 NC_005261.1 + 73761 0.67 0.989624
Target:  5'- aCGGCcgcuucuacGAGGCGCugGC-CUgCGACGUGc -3'
miRNA:   3'- gGCCG---------UUUUGUGugUGuGA-GCUGCAU- -5'
23725 5' -49.9 NC_005261.1 + 131901 0.67 0.989624
Target:  5'- aCGGC---GCGCACcCGCUgGACGg- -3'
miRNA:   3'- gGCCGuuuUGUGUGuGUGAgCUGCau -5'
23725 5' -49.9 NC_005261.1 + 69272 0.67 0.989624
Target:  5'- cCCGGCGAGcCGCcCGCGC-CGACc-- -3'
miRNA:   3'- -GGCCGUUUuGUGuGUGUGaGCUGcau -5'
23725 5' -49.9 NC_005261.1 + 92956 0.67 0.989624
Target:  5'- cCCGGaCAAAggcuGCGCACGCGgUUGGCu-- -3'
miRNA:   3'- -GGCC-GUUU----UGUGUGUGUgAGCUGcau -5'
23725 5' -49.9 NC_005261.1 + 135772 0.67 0.990934
Target:  5'- uCCGGCGcaGAGCGCGugcCGCugUCGGagGUGa -3'
miRNA:   3'- -GGCCGU--UUUGUGU---GUGugAGCUg-CAU- -5'
23725 5' -49.9 NC_005261.1 + 54493 0.67 0.990934
Target:  5'- gCGGCAggcgcAAACGCAgGCGCccuccggCGACGg- -3'
miRNA:   3'- gGCCGU-----UUUGUGUgUGUGa------GCUGCau -5'
23725 5' -49.9 NC_005261.1 + 53114 0.67 0.990934
Target:  5'- gCGGCGcuGCGCGC-CGCcaacagggCGGCGUAc -3'
miRNA:   3'- gGCCGUuuUGUGUGuGUGa-------GCUGCAU- -5'
23725 5' -49.9 NC_005261.1 + 23344 0.67 0.990934
Target:  5'- gCGGCGcAGCGCGCGCgugUCGGcCGUGa -3'
miRNA:   3'- gGCCGUuUUGUGUGUGug-AGCU-GCAU- -5'
23725 5' -49.9 NC_005261.1 + 4467 0.67 0.990934
Target:  5'- gCGGCGGcccguCGCGCgGCGCcgCGGCGUAg -3'
miRNA:   3'- gGCCGUUuu---GUGUG-UGUGa-GCUGCAU- -5'
23725 5' -49.9 NC_005261.1 + 32065 0.67 0.990934
Target:  5'- gCCGcGCAGAGCGCGgCGCugggGCUCGGgGa- -3'
miRNA:   3'- -GGC-CGUUUUGUGU-GUG----UGAGCUgCau -5'
23725 5' -49.9 NC_005261.1 + 96334 0.67 0.989624
Target:  5'- cCUGGCGcgGcCGCGCGCACcUGACGc- -3'
miRNA:   3'- -GGCCGUuuU-GUGUGUGUGaGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 70127 0.68 0.9848
Target:  5'- cCCGGCAAAGgccaGCACGCUC-ACGa- -3'
miRNA:   3'- -GGCCGUUUUgug-UGUGUGAGcUGCau -5'
23725 5' -49.9 NC_005261.1 + 34375 0.68 0.9848
Target:  5'- gCGGCGccGCGCGCAgACgCGGCGc- -3'
miRNA:   3'- gGCCGUuuUGUGUGUgUGaGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 95589 0.68 0.9848
Target:  5'- cCCGGCGAcuCGCAcCGCAC-CGGCc-- -3'
miRNA:   3'- -GGCCGUUuuGUGU-GUGUGaGCUGcau -5'
23725 5' -49.9 NC_005261.1 + 96998 0.68 0.9848
Target:  5'- gCGGCuAAGCGCGC-CAUUgGGCGg- -3'
miRNA:   3'- gGCCGuUUUGUGUGuGUGAgCUGCau -5'
23725 5' -49.9 NC_005261.1 + 90213 0.68 0.9848
Target:  5'- gCGGCGGAGCGCcCuCGCgCGGCGg- -3'
miRNA:   3'- gGCCGUUUUGUGuGuGUGaGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 75370 0.68 0.978432
Target:  5'- gCCGGCGuaccuGGACgcccugGCGCGCGCcaUCGACGa- -3'
miRNA:   3'- -GGCCGU-----UUUG------UGUGUGUG--AGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 71840 0.68 0.978432
Target:  5'- gCGGCGAAGuccgcCACugGCGCUCG-CGc- -3'
miRNA:   3'- gGCCGUUUU-----GUGugUGUGAGCuGCau -5'
23725 5' -49.9 NC_005261.1 + 17093 0.68 0.980742
Target:  5'- cCCGGUGGugUGCcaGCGCUCGAUGUAg -3'
miRNA:   3'- -GGCCGUUuuGUGugUGUGAGCUGCAU- -5'
23725 5' -49.9 NC_005261.1 + 128810 0.68 0.9848
Target:  5'- gCGGCGGGGCucgcgcugcgGCugACGCUCGcGCGg- -3'
miRNA:   3'- gGCCGUUUUG----------UGugUGUGAGC-UGCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.