miRNA display CGI


Results 81 - 100 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23725 5' -49.9 NC_005261.1 + 52887 0.68 0.982861
Target:  5'- gCGGCGGgucguuaaauAGC-CACACGCgCGACGUc -3'
miRNA:   3'- gGCCGUU----------UUGuGUGUGUGaGCUGCAu -5'
23725 5' -49.9 NC_005261.1 + 28572 0.68 0.982861
Target:  5'- gCCGGgcCGAGGCGCGCgaGCGC-CGGCGg- -3'
miRNA:   3'- -GGCC--GUUUUGUGUG--UGUGaGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 54265 0.68 0.982861
Target:  5'- cCUGGCGccGCGCACACuggacCUCgGGCGUu -3'
miRNA:   3'- -GGCCGUuuUGUGUGUGu----GAG-CUGCAu -5'
23725 5' -49.9 NC_005261.1 + 68157 0.68 0.982861
Target:  5'- gCCGGCuacACGCGCGCggaGCUCGcGCGc- -3'
miRNA:   3'- -GGCCGuuuUGUGUGUG---UGAGC-UGCau -5'
23725 5' -49.9 NC_005261.1 + 52659 0.68 0.982861
Target:  5'- cCCGGCcc--CGCGCGCACuUCGAgCGg- -3'
miRNA:   3'- -GGCCGuuuuGUGUGUGUG-AGCU-GCau -5'
23725 5' -49.9 NC_005261.1 + 71840 0.68 0.978432
Target:  5'- gCGGCGAAGuccgcCACugGCGCUCG-CGc- -3'
miRNA:   3'- gGCCGUUUU-----GUGugUGUGAGCuGCau -5'
23725 5' -49.9 NC_005261.1 + 71266 0.68 0.978432
Target:  5'- gCCGaGCAGcACGCGCGCcagcaGCUUGAgGUGg -3'
miRNA:   3'- -GGC-CGUUuUGUGUGUG-----UGAGCUgCAU- -5'
23725 5' -49.9 NC_005261.1 + 136599 0.68 0.986398
Target:  5'- cCCGGCGcagcgugGAgcgGCGCGCGCGCgccgagggCGGCGg- -3'
miRNA:   3'- -GGCCGU-------UU---UGUGUGUGUGa-------GCUGCau -5'
23725 5' -49.9 NC_005261.1 + 31577 0.68 0.986567
Target:  5'- aCgGGCGcgccGGACGugaGCGCGCUCGGCGc- -3'
miRNA:   3'- -GgCCGU----UUUGUg--UGUGUGAGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 131589 0.68 0.9848
Target:  5'- aCGGCcGAggccuACGCGCGCGCgCGcACGUAc -3'
miRNA:   3'- gGCCGuUU-----UGUGUGUGUGaGC-UGCAU- -5'
23725 5' -49.9 NC_005261.1 + 106936 0.68 0.9848
Target:  5'- gCCaGCGAcACGCGCAC-CUCGGCc-- -3'
miRNA:   3'- -GGcCGUUuUGUGUGUGuGAGCUGcau -5'
23725 5' -49.9 NC_005261.1 + 96998 0.68 0.9848
Target:  5'- gCGGCuAAGCGCGC-CAUUgGGCGg- -3'
miRNA:   3'- gGCCGuUUUGUGUGuGUGAgCUGCau -5'
23725 5' -49.9 NC_005261.1 + 34375 0.68 0.9848
Target:  5'- gCGGCGccGCGCGCAgACgCGGCGc- -3'
miRNA:   3'- gGCCGUuuUGUGUGUgUGaGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 95589 0.68 0.9848
Target:  5'- cCCGGCGAcuCGCAcCGCAC-CGGCc-- -3'
miRNA:   3'- -GGCCGUUuuGUGU-GUGUGaGCUGcau -5'
23725 5' -49.9 NC_005261.1 + 70127 0.68 0.9848
Target:  5'- cCCGGCAAAGgccaGCACGCUC-ACGa- -3'
miRNA:   3'- -GGCCGUUUUgug-UGUGUGAGcUGCau -5'
23725 5' -49.9 NC_005261.1 + 16475 0.68 0.9848
Target:  5'- aCGGCGGGACG-ACGCcCUCGugGc- -3'
miRNA:   3'- gGCCGUUUUGUgUGUGuGAGCugCau -5'
23725 5' -49.9 NC_005261.1 + 90213 0.68 0.9848
Target:  5'- gCGGCGGAGCGCcCuCGCgCGGCGg- -3'
miRNA:   3'- gGCCGUUUUGUGuGuGUGaGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 128810 0.68 0.9848
Target:  5'- gCGGCGGGGCucgcgcugcgGCugACGCUCGcGCGg- -3'
miRNA:   3'- gGCCGUUUUG----------UGugUGUGAGC-UGCau -5'
23725 5' -49.9 NC_005261.1 + 69535 0.68 0.9848
Target:  5'- gCgGGCGcuGGCGCGCGCGCUggggaCGGCGg- -3'
miRNA:   3'- -GgCCGUu-UUGUGUGUGUGA-----GCUGCau -5'
23725 5' -49.9 NC_005261.1 + 94359 0.68 0.978432
Target:  5'- uCCGGCAcacAGCGCACGgcCGgUCGAUGg- -3'
miRNA:   3'- -GGCCGUu--UUGUGUGU--GUgAGCUGCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.