miRNA display CGI


Results 41 - 60 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23725 5' -49.9 NC_005261.1 + 28463 0.71 0.921567
Target:  5'- cCCGGC-GGGCACGagccggcCACGCUCGACcuGUAc -3'
miRNA:   3'- -GGCCGuUUUGUGU-------GUGUGAGCUG--CAU- -5'
23725 5' -49.9 NC_005261.1 + 88376 0.71 0.916234
Target:  5'- aCGGCcGAGCGCGCGCccaagguguacCUCGACGg- -3'
miRNA:   3'- gGCCGuUUUGUGUGUGu----------GAGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 15480 0.7 0.952159
Target:  5'- gCGGC-GGACACGCGcCGCUCGcuGCGg- -3'
miRNA:   3'- gGCCGuUUUGUGUGU-GUGAGC--UGCau -5'
23725 5' -49.9 NC_005261.1 + 20113 0.7 0.952159
Target:  5'- gCGGCAAGGCGCGCGgGCcCGcaGCGg- -3'
miRNA:   3'- gGCCGUUUUGUGUGUgUGaGC--UGCau -5'
23725 5' -49.9 NC_005261.1 + 88196 0.7 0.956265
Target:  5'- gCCGGCGAGGCGgGcCGCGC-CGGCa-- -3'
miRNA:   3'- -GGCCGUUUUGUgU-GUGUGaGCUGcau -5'
23725 5' -49.9 NC_005261.1 + 121648 0.7 0.956265
Target:  5'- gCCGGC-GAGCGCGgGCuguccGCgUCGGCGUAg -3'
miRNA:   3'- -GGCCGuUUUGUGUgUG-----UG-AGCUGCAU- -5'
23725 5' -49.9 NC_005261.1 + 1310 0.7 0.956265
Target:  5'- gCCGGCG--GCgGCACGCGCUCcggGACGc- -3'
miRNA:   3'- -GGCCGUuuUG-UGUGUGUGAG---CUGCau -5'
23725 5' -49.9 NC_005261.1 + 5138 0.7 0.956265
Target:  5'- gCCGGCGcu-CGCGCGC-CUCGGCc-- -3'
miRNA:   3'- -GGCCGUuuuGUGUGUGuGAGCUGcau -5'
23725 5' -49.9 NC_005261.1 + 125963 0.7 0.956265
Target:  5'- aCGGCA--GCACuu-CGCUCGGCGa- -3'
miRNA:   3'- gGCCGUuuUGUGuguGUGAGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 29668 0.7 0.960125
Target:  5'- gCCGcGCAGAACGCGCuguggGCGCUgcCGcACGUGg -3'
miRNA:   3'- -GGC-CGUUUUGUGUG-----UGUGA--GC-UGCAU- -5'
23725 5' -49.9 NC_005261.1 + 5875 0.7 0.952159
Target:  5'- aCGGagaGAGGCugGCugGCUCGGCu-- -3'
miRNA:   3'- gGCCg--UUUUGugUGugUGAGCUGcau -5'
23725 5' -49.9 NC_005261.1 + 73487 0.7 0.947801
Target:  5'- gCGGCGcgGCGCGCGgACgCGGCGa- -3'
miRNA:   3'- gGCCGUuuUGUGUGUgUGaGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 56548 0.7 0.960125
Target:  5'- gCCGGCugguGGGCACguccuucucGCAC-CUCGGCGg- -3'
miRNA:   3'- -GGCCGu---UUUGUG---------UGUGuGAGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 12322 0.7 0.943189
Target:  5'- gCCGGCGG---GCGCGCGCUUGGCc-- -3'
miRNA:   3'- -GGCCGUUuugUGUGUGUGAGCUGcau -5'
23725 5' -49.9 NC_005261.1 + 72287 0.7 0.943662
Target:  5'- gCCGGCugagguucgcgacguGGGC-CACGCGCUCGAUGc- -3'
miRNA:   3'- -GGCCGu--------------UUUGuGUGUGUGAGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 150 0.7 0.947801
Target:  5'- gCUGGCAGGGCugGCGgAgUUGGCGg- -3'
miRNA:   3'- -GGCCGUUUUGugUGUgUgAGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 137833 0.7 0.947801
Target:  5'- gCUGGCAGGGCugGCGgAgUUGGCGg- -3'
miRNA:   3'- -GGCCGUUUUGugUGUgUgAGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 134236 0.7 0.947801
Target:  5'- gUCGGCGugGCGCACGCGCccugCGcggccGCGUAc -3'
miRNA:   3'- -GGCCGUuuUGUGUGUGUGa---GC-----UGCAU- -5'
23725 5' -49.9 NC_005261.1 + 3564 0.7 0.947801
Target:  5'- gCGGCGccgcuaAGGCGCGCGCGCUCcaccGCGUc -3'
miRNA:   3'- gGCCGU------UUUGUGUGUGUGAGc---UGCAu -5'
23725 5' -49.9 NC_005261.1 + 32021 0.7 0.947801
Target:  5'- aCCGGCA--GCGCGugcugcCGCGgCUCGACGg- -3'
miRNA:   3'- -GGCCGUuuUGUGU------GUGU-GAGCUGCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.