miRNA display CGI


Results 1 - 20 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23725 5' -49.9 NC_005261.1 + 93575 0.84 0.343189
Target:  5'- gCGGCGGGACGCgaucGCGCGCUCGGCGa- -3'
miRNA:   3'- gGCCGUUUUGUG----UGUGUGAGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 72237 0.79 0.559925
Target:  5'- gCCGGCGGuGCGCGCAaAgUCGACGUGa -3'
miRNA:   3'- -GGCCGUUuUGUGUGUgUgAGCUGCAU- -5'
23725 5' -49.9 NC_005261.1 + 3872 0.77 0.645103
Target:  5'- gCCGGCGAGcacgGCGCGCA-GCUCGGCGa- -3'
miRNA:   3'- -GGCCGUUU----UGUGUGUgUGAGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 118681 0.77 0.666461
Target:  5'- gCGGCGGGcGCugGCGCACgcgCGGCGUGg -3'
miRNA:   3'- gGCCGUUU-UGugUGUGUGa--GCUGCAU- -5'
23725 5' -49.9 NC_005261.1 + 93732 0.76 0.729483
Target:  5'- gCGGCGGcAGCGCGCGCuucguACUCGGCGg- -3'
miRNA:   3'- gGCCGUU-UUGUGUGUG-----UGAGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 108538 0.75 0.759892
Target:  5'- cUCGGUAGgccagcgccgccGACACGCGCACgucgugCGACGUGc -3'
miRNA:   3'- -GGCCGUU------------UUGUGUGUGUGa-----GCUGCAU- -5'
23725 5' -49.9 NC_005261.1 + 104853 0.75 0.779564
Target:  5'- aCCGcGCGGGuCACGCACGCgUCGAUGUc -3'
miRNA:   3'- -GGC-CGUUUuGUGUGUGUG-AGCUGCAu -5'
23725 5' -49.9 NC_005261.1 + 30141 0.75 0.789188
Target:  5'- gCGGUGGAGCGCGCGCGCcuuagCGGCGc- -3'
miRNA:   3'- gGCCGUUUUGUGUGUGUGa----GCUGCau -5'
23725 5' -49.9 NC_005261.1 + 77077 0.74 0.826041
Target:  5'- gCCGcGCGAGGCGCugGCGCggacgcugcucUCGACGg- -3'
miRNA:   3'- -GGC-CGUUUUGUGugUGUG-----------AGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 123163 0.74 0.826041
Target:  5'- -gGGCGGGGCGgGCGCGCgggCGugGUGg -3'
miRNA:   3'- ggCCGUUUUGUgUGUGUGa--GCugCAU- -5'
23725 5' -49.9 NC_005261.1 + 108464 0.74 0.829566
Target:  5'- gUCGGCGAGgaucuccgcgucggcGCGCACGCGCgccgCGACGc- -3'
miRNA:   3'- -GGCCGUUU---------------UGUGUGUGUGa---GCUGCau -5'
23725 5' -49.9 NC_005261.1 + 53855 0.73 0.840803
Target:  5'- uCCGGCAAGcgcuccagcgcggcGCGCGCGCugUCGAguCGa- -3'
miRNA:   3'- -GGCCGUUU--------------UGUGUGUGugAGCU--GCau -5'
23725 5' -49.9 NC_005261.1 + 105253 0.73 0.843348
Target:  5'- gCGGCAuccGCGCgACAgGCUCGGCGg- -3'
miRNA:   3'- gGCCGUuu-UGUG-UGUgUGAGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 129973 0.73 0.85169
Target:  5'- gCCaGGCAAGugucGCGCAUGCGCUgGGCGUc -3'
miRNA:   3'- -GG-CCGUUU----UGUGUGUGUGAgCUGCAu -5'
23725 5' -49.9 NC_005261.1 + 45123 0.73 0.859815
Target:  5'- aCgGGCGcgcuGAUGCugACGCUCGACGg- -3'
miRNA:   3'- -GgCCGUu---UUGUGugUGUGAGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 47323 0.73 0.859815
Target:  5'- aCCGGgGAGAagGCGCGCGCgUCGGCGa- -3'
miRNA:   3'- -GGCCgUUUUg-UGUGUGUG-AGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 90395 0.73 0.873108
Target:  5'- gCCGGCGGGGCugGCgcccgGCGCggacuacgcgacguUCGACGUGg -3'
miRNA:   3'- -GGCCGUUUUGugUG-----UGUG--------------AGCUGCAU- -5'
23725 5' -49.9 NC_005261.1 + 48022 0.72 0.882814
Target:  5'- gCCGGCAGAgcagggcgaggaGCACGCGCGCgCGGuCGg- -3'
miRNA:   3'- -GGCCGUUU------------UGUGUGUGUGaGCU-GCau -5'
23725 5' -49.9 NC_005261.1 + 56367 0.72 0.882814
Target:  5'- aCCGGCGAGGCGCACGucucccaggaGCUCG-CGg- -3'
miRNA:   3'- -GGCCGUUUUGUGUGUg---------UGAGCuGCau -5'
23725 5' -49.9 NC_005261.1 + 92071 0.72 0.882814
Target:  5'- cCCGGUAGAacaGCACACGCGCgucgCGcACGc- -3'
miRNA:   3'- -GGCCGUUU---UGUGUGUGUGa---GC-UGCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.