miRNA display CGI


Results 21 - 40 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23725 5' -49.9 NC_005261.1 + 105391 0.72 0.890002
Target:  5'- gCGcGCuGAcCACGCGcCGCUCGACGUAg -3'
miRNA:   3'- gGC-CGuUUuGUGUGU-GUGAGCUGCAU- -5'
23725 5' -49.9 NC_005261.1 + 43432 0.72 0.890002
Target:  5'- gCCGGCGGGGa--GCugGCUCGGCGc- -3'
miRNA:   3'- -GGCCGUUUUgugUGugUGAGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 74946 0.72 0.896941
Target:  5'- gCGGC---GCGgGCGCGCUCGGCGc- -3'
miRNA:   3'- gGCCGuuuUGUgUGUGUGAGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 101933 0.72 0.896941
Target:  5'- gCGGUAGAACGcCACGUACUUGGCGa- -3'
miRNA:   3'- gGCCGUUUUGU-GUGUGUGAGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 76434 0.72 0.896941
Target:  5'- gCCGGCGccauGGCGgACGCGCcCGACGg- -3'
miRNA:   3'- -GGCCGUu---UUGUgUGUGUGaGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 114650 0.72 0.896941
Target:  5'- gCGGCAGu---CAUAUACUUGACGUGg -3'
miRNA:   3'- gGCCGUUuuguGUGUGUGAGCUGCAU- -5'
23725 5' -49.9 NC_005261.1 + 14085 0.72 0.896941
Target:  5'- gUCGGCGAAGCACuCGCGgUCGuCGa- -3'
miRNA:   3'- -GGCCGUUUUGUGuGUGUgAGCuGCau -5'
23725 5' -49.9 NC_005261.1 + 130524 0.72 0.903629
Target:  5'- gCUGGcCGAAGCGCGCcCGCUCGucGCGUu -3'
miRNA:   3'- -GGCC-GUUUUGUGUGuGUGAGC--UGCAu -5'
23725 5' -49.9 NC_005261.1 + 93495 0.72 0.903629
Target:  5'- gCGGCGAAGCGCGCGaACcgCGGCGc- -3'
miRNA:   3'- gGCCGUUUUGUGUGUgUGa-GCUGCau -5'
23725 5' -49.9 NC_005261.1 + 5911 0.72 0.91006
Target:  5'- gCCGGCc-GGCugGCuagcuCGCUCGACGg- -3'
miRNA:   3'- -GGCCGuuUUGugUGu----GUGAGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 57969 0.72 0.91006
Target:  5'- gCCGGCGAcGCAgGCGCGCgCGGCc-- -3'
miRNA:   3'- -GGCCGUUuUGUgUGUGUGaGCUGcau -5'
23725 5' -49.9 NC_005261.1 + 88376 0.71 0.916234
Target:  5'- aCGGCcGAGCGCGCGCccaagguguacCUCGACGg- -3'
miRNA:   3'- gGCCGuUUUGUGUGUGu----------GAGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 28463 0.71 0.921567
Target:  5'- cCCGGC-GGGCACGagccggcCACGCUCGACcuGUAc -3'
miRNA:   3'- -GGCCGuUUUGUGU-------GUGUGAGCUG--CAU- -5'
23725 5' -49.9 NC_005261.1 + 69406 0.71 0.922147
Target:  5'- cCUGGCcucccGACACACGCGC-CGGCGc- -3'
miRNA:   3'- -GGCCGuu---UUGUGUGUGUGaGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 84010 0.71 0.927799
Target:  5'- cCCGGCGGGAUGCGCAaAgaCGACGg- -3'
miRNA:   3'- -GGCCGUUUUGUGUGUgUgaGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 88484 0.71 0.927799
Target:  5'- gCCGcGcCGGAGCGCGcCGCGCUCGACc-- -3'
miRNA:   3'- -GGC-C-GUUUUGUGU-GUGUGAGCUGcau -5'
23725 5' -49.9 NC_005261.1 + 108720 0.71 0.927799
Target:  5'- aCGGCGAAgaGCGCGCGgGCcagCGGCGg- -3'
miRNA:   3'- gGCCGUUU--UGUGUGUgUGa--GCUGCau -5'
23725 5' -49.9 NC_005261.1 + 86977 0.71 0.933189
Target:  5'- uCCGGCGGcAGCACgGCGCcCUCGugGc- -3'
miRNA:   3'- -GGCCGUU-UUGUG-UGUGuGAGCugCau -5'
23725 5' -49.9 NC_005261.1 + 95412 0.71 0.938319
Target:  5'- aCGGCGGAGCAgaacaacgcCACGCuggcCUCGACGc- -3'
miRNA:   3'- gGCCGUUUUGU---------GUGUGu---GAGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 106112 0.71 0.938319
Target:  5'- gCCGGCGucgccGGCGCGCGCGCgcCGGCa-- -3'
miRNA:   3'- -GGCCGUu----UUGUGUGUGUGa-GCUGcau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.