miRNA display CGI


Results 61 - 80 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23725 5' -49.9 NC_005261.1 + 88814 0.7 0.960125
Target:  5'- gCCGGCGGcggggcggcGGCGCGCGCcgGCcCGGCGUc -3'
miRNA:   3'- -GGCCGUU---------UUGUGUGUG--UGaGCUGCAu -5'
23725 5' -49.9 NC_005261.1 + 56548 0.7 0.960125
Target:  5'- gCCGGCugguGGGCACguccuucucGCAC-CUCGGCGg- -3'
miRNA:   3'- -GGCCGu---UUUGUG---------UGUGuGAGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 29668 0.7 0.960125
Target:  5'- gCCGcGCAGAACGCGCuguggGCGCUgcCGcACGUGg -3'
miRNA:   3'- -GGC-CGUUUUGUGUG-----UGUGA--GC-UGCAU- -5'
23725 5' -49.9 NC_005261.1 + 62836 0.69 0.963743
Target:  5'- aCCGGCGggGGACugGCGCGCcccgcgccacgCGGCGg- -3'
miRNA:   3'- -GGCCGU--UUUGugUGUGUGa----------GCUGCau -5'
23725 5' -49.9 NC_005261.1 + 100724 0.69 0.963743
Target:  5'- gCGGCcgcgccGCGCGCGCGCgCGGCGg- -3'
miRNA:   3'- gGCCGuuu---UGUGUGUGUGaGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 75875 0.69 0.967125
Target:  5'- aCGGCGccguGGGCGCGCGCAg-CGGCGa- -3'
miRNA:   3'- gGCCGU----UUUGUGUGUGUgaGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 98269 0.69 0.967125
Target:  5'- -aGGCG--GCGCGCGCGUUCGACGc- -3'
miRNA:   3'- ggCCGUuuUGUGUGUGUGAGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 62296 0.69 0.967125
Target:  5'- gUCGGCGccGCGCGgGCGCgCGGCGg- -3'
miRNA:   3'- -GGCCGUuuUGUGUgUGUGaGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 76465 0.69 0.969973
Target:  5'- aCGGCGGcgccGGCGCGCGCGCggaccccgagcccUCGGCGc- -3'
miRNA:   3'- gGCCGUU----UUGUGUGUGUG-------------AGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 15367 0.69 0.970278
Target:  5'- cCCGGCG--GCGCucgGCGCcCUCGGCGc- -3'
miRNA:   3'- -GGCCGUuuUGUG---UGUGuGAGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 131506 0.69 0.970278
Target:  5'- uCCGGCAcguGCGCGCGCAgUUCaACGUc -3'
miRNA:   3'- -GGCCGUuu-UGUGUGUGU-GAGcUGCAu -5'
23725 5' -49.9 NC_005261.1 + 90894 0.69 0.970278
Target:  5'- aCGGCAugGCGCgGCAgGuCUCGGCGg- -3'
miRNA:   3'- gGCCGUuuUGUG-UGUgU-GAGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 89584 0.69 0.970278
Target:  5'- aCGGCcgucuACgACGCGCgACUCGACGg- -3'
miRNA:   3'- gGCCGuuu--UG-UGUGUG-UGAGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 59259 0.69 0.970278
Target:  5'- gCCGGCGc--CACGCGuCGCaCGGCGUGu -3'
miRNA:   3'- -GGCCGUuuuGUGUGU-GUGaGCUGCAU- -5'
23725 5' -49.9 NC_005261.1 + 92156 0.69 0.970278
Target:  5'- cUCGGCGA---GCGCGCGCUCGGUGg- -3'
miRNA:   3'- -GGCCGUUuugUGUGUGUGAGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 60193 0.69 0.972925
Target:  5'- gCGGCGGAgaaguccGCGCGCGCGCUCccgccGCGg- -3'
miRNA:   3'- gGCCGUUU-------UGUGUGUGUGAGc----UGCau -5'
23725 5' -49.9 NC_005261.1 + 30332 0.69 0.973208
Target:  5'- gCCGGCGcgGCugGCggccGCGCUCG-CGg- -3'
miRNA:   3'- -GGCCGUuuUGugUG----UGUGAGCuGCau -5'
23725 5' -49.9 NC_005261.1 + 84696 0.69 0.973208
Target:  5'- gCCGGCGcgcGGGCACGCgaGCACaaagCGGCGc- -3'
miRNA:   3'- -GGCCGU---UUUGUGUG--UGUGa---GCUGCau -5'
23725 5' -49.9 NC_005261.1 + 34033 0.69 0.973208
Target:  5'- aCCGGCGcgGCGCGCGCGCUg------ -3'
miRNA:   3'- -GGCCGUuuUGUGUGUGUGAgcugcau -5'
23725 5' -49.9 NC_005261.1 + 73702 0.69 0.973208
Target:  5'- cUCGGCcauGGCGCAggacCGCGgUCGGCGUGc -3'
miRNA:   3'- -GGCCGuu-UUGUGU----GUGUgAGCUGCAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.