miRNA display CGI


Results 21 - 40 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23725 5' -49.9 NC_005261.1 + 87409 0.66 0.995659
Target:  5'- aCGGCGccgucGACGgGCGCGC-CGGCGa- -3'
miRNA:   3'- gGCCGUu----UUGUgUGUGUGaGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 83656 0.66 0.995659
Target:  5'- gCGGCGugaggcGGACGCGCGC-CUgGGCGc- -3'
miRNA:   3'- gGCCGU------UUUGUGUGUGuGAgCUGCau -5'
23725 5' -49.9 NC_005261.1 + 133324 0.66 0.995659
Target:  5'- cUCGcGCAGcuccugccGGCACGCGCGCgCGGCGc- -3'
miRNA:   3'- -GGC-CGUU--------UUGUGUGUGUGaGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 118144 0.66 0.994926
Target:  5'- nCCGGCuc-GCGCAgACGCUgGcCGUc -3'
miRNA:   3'- -GGCCGuuuUGUGUgUGUGAgCuGCAu -5'
23725 5' -49.9 NC_005261.1 + 102560 0.66 0.994926
Target:  5'- cCCGGC-GGACAC-CGC-CUCGcCGUc -3'
miRNA:   3'- -GGCCGuUUUGUGuGUGuGAGCuGCAu -5'
23725 5' -49.9 NC_005261.1 + 131765 0.66 0.994926
Target:  5'- gCCGGCGcggcGGGCGCGC-CGCUgGGCc-- -3'
miRNA:   3'- -GGCCGU----UUUGUGUGuGUGAgCUGcau -5'
23725 5' -49.9 NC_005261.1 + 104203 0.66 0.994926
Target:  5'- aCGGCGuccAGGCGCuCGCGCgCGGCGc- -3'
miRNA:   3'- gGCCGU---UUUGUGuGUGUGaGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 57420 0.66 0.994926
Target:  5'- gCCGGCGccgcgagcccaGGAUGCGCACcCgcgCGACGg- -3'
miRNA:   3'- -GGCCGU-----------UUUGUGUGUGuGa--GCUGCau -5'
23725 5' -49.9 NC_005261.1 + 4381 0.66 0.994926
Target:  5'- gCCGcCGAAGCGCACGCGgcCgggCGGCGg- -3'
miRNA:   3'- -GGCcGUUUUGUGUGUGU--Ga--GCUGCau -5'
23725 5' -49.9 NC_005261.1 + 45600 0.66 0.994926
Target:  5'- aCGGCGAucUAC-CACAC-CGGCGg- -3'
miRNA:   3'- gGCCGUUuuGUGuGUGUGaGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 91915 0.66 0.994926
Target:  5'- cCCGGCGcaccacGAGCACGaacaucgucugcCACACgugggCGACGa- -3'
miRNA:   3'- -GGCCGU------UUUGUGU------------GUGUGa----GCUGCau -5'
23725 5' -49.9 NC_005261.1 + 118040 0.66 0.994926
Target:  5'- cCCGGCcgcGACGCcCGCGCU-GGCGg- -3'
miRNA:   3'- -GGCCGuu-UUGUGuGUGUGAgCUGCau -5'
23725 5' -49.9 NC_005261.1 + 82359 0.66 0.994926
Target:  5'- gUCGGCGucGGCGCGCGCGCgCGcCGc- -3'
miRNA:   3'- -GGCCGUu-UUGUGUGUGUGaGCuGCau -5'
23725 5' -49.9 NC_005261.1 + 95645 0.66 0.994096
Target:  5'- -gGGCGAgcgcGACGCGCGgCGCcgCGACGg- -3'
miRNA:   3'- ggCCGUU----UUGUGUGU-GUGa-GCUGCau -5'
23725 5' -49.9 NC_005261.1 + 100957 0.66 0.994096
Target:  5'- aCGGC---GCGCGCGguCUCGugGa- -3'
miRNA:   3'- gGCCGuuuUGUGUGUguGAGCugCau -5'
23725 5' -49.9 NC_005261.1 + 46812 0.66 0.994096
Target:  5'- gCGcGCGGAugGCGCGCGCcaggCGcGCGUGc -3'
miRNA:   3'- gGC-CGUUUugUGUGUGUGa---GC-UGCAU- -5'
23725 5' -49.9 NC_005261.1 + 101104 0.66 0.994096
Target:  5'- gCGGCc--GCGCGCGC-CUUGGCGc- -3'
miRNA:   3'- gGCCGuuuUGUGUGUGuGAGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 84268 0.66 0.994096
Target:  5'- cCCGGCAugGCGCAgGugcCGC-CGGCGg- -3'
miRNA:   3'- -GGCCGUuuUGUGUgU---GUGaGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 49223 0.66 0.994096
Target:  5'- gCCGGCGcccAGCGCGCGCAggUCGGCc-- -3'
miRNA:   3'- -GGCCGUu--UUGUGUGUGUg-AGCUGcau -5'
23725 5' -49.9 NC_005261.1 + 31874 0.66 0.994096
Target:  5'- cCCGGCGccuuCGCGCGCGC-CGAgGc- -3'
miRNA:   3'- -GGCCGUuuu-GUGUGUGUGaGCUgCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.