Results 41 - 60 of 186 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23725 | 5' | -49.9 | NC_005261.1 | + | 1695 | 0.66 | 0.994007 |
Target: 5'- gCGGCA--GCACGCGCugccgguACUCGcGCGg- -3' miRNA: 3'- gGCCGUuuUGUGUGUG-------UGAGC-UGCau -5' |
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23725 | 5' | -49.9 | NC_005261.1 | + | 112421 | 0.66 | 0.993827 |
Target: 5'- aCgGGCAucugcguguacaucGAGCcCugGCACUgCGACGUGc -3' miRNA: 3'- -GgCCGU--------------UUUGuGugUGUGA-GCUGCAU- -5' |
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23725 | 5' | -49.9 | NC_005261.1 | + | 130986 | 0.67 | 0.993548 |
Target: 5'- cCCGGCGAAaagacccuggugcugGC-CACGCGCUUcuACGUGu -3' miRNA: 3'- -GGCCGUUU---------------UGuGUGUGUGAGc-UGCAU- -5' |
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23725 | 5' | -49.9 | NC_005261.1 | + | 125707 | 0.67 | 0.99316 |
Target: 5'- cCCGGCGAcGGCcgcCGCGgGCUCGGCu-- -3' miRNA: 3'- -GGCCGUU-UUGu--GUGUgUGAGCUGcau -5' |
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23725 | 5' | -49.9 | NC_005261.1 | + | 118494 | 0.67 | 0.99316 |
Target: 5'- gCGGCGcugcGGACccugGCGC-CGCUCGGCGa- -3' miRNA: 3'- gGCCGU----UUUG----UGUGuGUGAGCUGCau -5' |
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23725 | 5' | -49.9 | NC_005261.1 | + | 117070 | 0.67 | 0.99316 |
Target: 5'- cCUGGUuAAGCACGa--GCUCGGCGa- -3' miRNA: 3'- -GGCCGuUUUGUGUgugUGAGCUGCau -5' |
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23725 | 5' | -49.9 | NC_005261.1 | + | 62463 | 0.67 | 0.99316 |
Target: 5'- gCGGCgGAAGCAgGCACAC-CG-CGUc -3' miRNA: 3'- gGCCG-UUUUGUgUGUGUGaGCuGCAu -5' |
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23725 | 5' | -49.9 | NC_005261.1 | + | 55060 | 0.67 | 0.992857 |
Target: 5'- gCCGGCGAGcucggccgccgaagGCAUGCGCagACUCG-CGUc -3' miRNA: 3'- -GGCCGUUU--------------UGUGUGUG--UGAGCuGCAu -5' |
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23725 | 5' | -49.9 | NC_005261.1 | + | 20314 | 0.67 | 0.992109 |
Target: 5'- aCGGCGAcugggccccgAGC-CGCGCACgagCGACGc- -3' miRNA: 3'- gGCCGUU----------UUGuGUGUGUGa--GCUGCau -5' |
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23725 | 5' | -49.9 | NC_005261.1 | + | 16159 | 0.67 | 0.992109 |
Target: 5'- aCCGGCAGGGCaguaggggGCGCGgGCgUGGCGg- -3' miRNA: 3'- -GGCCGUUUUG--------UGUGUgUGaGCUGCau -5' |
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23725 | 5' | -49.9 | NC_005261.1 | + | 118596 | 0.67 | 0.992109 |
Target: 5'- gCCGccGCGGAGCuCGCGCugUCGGcCGUu -3' miRNA: 3'- -GGC--CGUUUUGuGUGUGugAGCU-GCAu -5' |
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23725 | 5' | -49.9 | NC_005261.1 | + | 113537 | 0.67 | 0.992109 |
Target: 5'- gCCGGCucgGGGCcguGCGCGCGCUgGACc-- -3' miRNA: 3'- -GGCCGu--UUUG---UGUGUGUGAgCUGcau -5' |
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23725 | 5' | -49.9 | NC_005261.1 | + | 108228 | 0.67 | 0.992109 |
Target: 5'- uCCaGCAugGCGCACGUGCcCGGCGUGa -3' miRNA: 3'- -GGcCGUuuUGUGUGUGUGaGCUGCAU- -5' |
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23725 | 5' | -49.9 | NC_005261.1 | + | 54493 | 0.67 | 0.990934 |
Target: 5'- gCGGCAggcgcAAACGCAgGCGCccuccggCGACGg- -3' miRNA: 3'- gGCCGU-----UUUGUGUgUGUGa------GCUGCau -5' |
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23725 | 5' | -49.9 | NC_005261.1 | + | 23344 | 0.67 | 0.990934 |
Target: 5'- gCGGCGcAGCGCGCGCgugUCGGcCGUGa -3' miRNA: 3'- gGCCGUuUUGUGUGUGug-AGCU-GCAU- -5' |
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23725 | 5' | -49.9 | NC_005261.1 | + | 53114 | 0.67 | 0.990934 |
Target: 5'- gCGGCGcuGCGCGC-CGCcaacagggCGGCGUAc -3' miRNA: 3'- gGCCGUuuUGUGUGuGUGa-------GCUGCAU- -5' |
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23725 | 5' | -49.9 | NC_005261.1 | + | 135772 | 0.67 | 0.990934 |
Target: 5'- uCCGGCGcaGAGCGCGugcCGCugUCGGagGUGa -3' miRNA: 3'- -GGCCGU--UUUGUGU---GUGugAGCUg-CAU- -5' |
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23725 | 5' | -49.9 | NC_005261.1 | + | 32065 | 0.67 | 0.990934 |
Target: 5'- gCCGcGCAGAGCGCGgCGCugggGCUCGGgGa- -3' miRNA: 3'- -GGC-CGUUUUGUGU-GUG----UGAGCUgCau -5' |
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23725 | 5' | -49.9 | NC_005261.1 | + | 4467 | 0.67 | 0.990934 |
Target: 5'- gCGGCGGcccguCGCGCgGCGCcgCGGCGUAg -3' miRNA: 3'- gGCCGUUuu---GUGUG-UGUGa-GCUGCAU- -5' |
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23725 | 5' | -49.9 | NC_005261.1 | + | 70230 | 0.67 | 0.989624 |
Target: 5'- uUGGCGccGCGCGCAaACUCGACc-- -3' miRNA: 3'- gGCCGUuuUGUGUGUgUGAGCUGcau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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