miRNA display CGI


Results 61 - 80 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23725 5' -49.9 NC_005261.1 + 19324 0.67 0.989624
Target:  5'- gCGGCAGucguAGCGCGCACgugccagcaGCUCGGgGg- -3'
miRNA:   3'- gGCCGUU----UUGUGUGUG---------UGAGCUgCau -5'
23725 5' -49.9 NC_005261.1 + 70885 0.67 0.989624
Target:  5'- gCCGGCGGuGCACAUggccguGCACUUGcGCGc- -3'
miRNA:   3'- -GGCCGUUuUGUGUG------UGUGAGC-UGCau -5'
23725 5' -49.9 NC_005261.1 + 70230 0.67 0.989624
Target:  5'- uUGGCGccGCGCGCAaACUCGACc-- -3'
miRNA:   3'- gGCCGUuuUGUGUGUgUGAGCUGcau -5'
23725 5' -49.9 NC_005261.1 + 73761 0.67 0.989624
Target:  5'- aCGGCcgcuucuacGAGGCGCugGC-CUgCGACGUGc -3'
miRNA:   3'- gGCCG---------UUUUGUGugUGuGA-GCUGCAU- -5'
23725 5' -49.9 NC_005261.1 + 131901 0.67 0.989624
Target:  5'- aCGGC---GCGCACcCGCUgGACGg- -3'
miRNA:   3'- gGCCGuuuUGUGUGuGUGAgCUGCau -5'
23725 5' -49.9 NC_005261.1 + 69272 0.67 0.989624
Target:  5'- cCCGGCGAGcCGCcCGCGC-CGACc-- -3'
miRNA:   3'- -GGCCGUUUuGUGuGUGUGaGCUGcau -5'
23725 5' -49.9 NC_005261.1 + 92956 0.67 0.989624
Target:  5'- cCCGGaCAAAggcuGCGCACGCGgUUGGCu-- -3'
miRNA:   3'- -GGCC-GUUU----UGUGUGUGUgAGCUGcau -5'
23725 5' -49.9 NC_005261.1 + 132608 0.67 0.988172
Target:  5'- cCCGGCGAGccgccaggggGCGCugGCGC-CGAgGa- -3'
miRNA:   3'- -GGCCGUUU----------UGUGugUGUGaGCUgCau -5'
23725 5' -49.9 NC_005261.1 + 127814 0.67 0.988172
Target:  5'- gCGGCGGGcCGCuCGCGCUCG-CGg- -3'
miRNA:   3'- gGCCGUUUuGUGuGUGUGAGCuGCau -5'
23725 5' -49.9 NC_005261.1 + 120079 0.67 0.988172
Target:  5'- aCGGCuaccccgugGAGGCucgGCACGCGCgCGACGUc -3'
miRNA:   3'- gGCCG---------UUUUG---UGUGUGUGaGCUGCAu -5'
23725 5' -49.9 NC_005261.1 + 89087 0.67 0.988172
Target:  5'- aCCGGCugcggcccGGGCGCGCugGCgCGcGCGUGg -3'
miRNA:   3'- -GGCCGu-------UUUGUGUGugUGaGC-UGCAU- -5'
23725 5' -49.9 NC_005261.1 + 36184 0.68 0.986567
Target:  5'- gCCGGCAGcGCAUGCGCGCUUa----- -3'
miRNA:   3'- -GGCCGUUuUGUGUGUGUGAGcugcau -5'
23725 5' -49.9 NC_005261.1 + 31577 0.68 0.986567
Target:  5'- aCgGGCGcgccGGACGugaGCGCGCUCGGCGc- -3'
miRNA:   3'- -GgCCGU----UUUGUg--UGUGUGAGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 136599 0.68 0.986398
Target:  5'- cCCGGCGcagcgugGAgcgGCGCGCGCGCgccgagggCGGCGg- -3'
miRNA:   3'- -GGCCGU-------UU---UGUGUGUGUGa-------GCUGCau -5'
23725 5' -49.9 NC_005261.1 + 106936 0.68 0.9848
Target:  5'- gCCaGCGAcACGCGCAC-CUCGGCc-- -3'
miRNA:   3'- -GGcCGUUuUGUGUGUGuGAGCUGcau -5'
23725 5' -49.9 NC_005261.1 + 96998 0.68 0.9848
Target:  5'- gCGGCuAAGCGCGC-CAUUgGGCGg- -3'
miRNA:   3'- gGCCGuUUUGUGUGuGUGAgCUGCau -5'
23725 5' -49.9 NC_005261.1 + 70127 0.68 0.9848
Target:  5'- cCCGGCAAAGgccaGCACGCUC-ACGa- -3'
miRNA:   3'- -GGCCGUUUUgug-UGUGUGAGcUGCau -5'
23725 5' -49.9 NC_005261.1 + 34375 0.68 0.9848
Target:  5'- gCGGCGccGCGCGCAgACgCGGCGc- -3'
miRNA:   3'- gGCCGUuuUGUGUGUgUGaGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 128810 0.68 0.9848
Target:  5'- gCGGCGGGGCucgcgcugcgGCugACGCUCGcGCGg- -3'
miRNA:   3'- gGCCGUUUUG----------UGugUGUGAGC-UGCau -5'
23725 5' -49.9 NC_005261.1 + 90213 0.68 0.9848
Target:  5'- gCGGCGGAGCGCcCuCGCgCGGCGg- -3'
miRNA:   3'- gGCCGUUUUGUGuGuGUGaGCUGCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.