miRNA display CGI


Results 81 - 100 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23725 5' -49.9 NC_005261.1 + 95589 0.68 0.9848
Target:  5'- cCCGGCGAcuCGCAcCGCAC-CGGCc-- -3'
miRNA:   3'- -GGCCGUUuuGUGU-GUGUGaGCUGcau -5'
23725 5' -49.9 NC_005261.1 + 96998 0.68 0.9848
Target:  5'- gCGGCuAAGCGCGC-CAUUgGGCGg- -3'
miRNA:   3'- gGCCGuUUUGUGUGuGUGAgCUGCau -5'
23725 5' -49.9 NC_005261.1 + 106936 0.68 0.9848
Target:  5'- gCCaGCGAcACGCGCAC-CUCGGCc-- -3'
miRNA:   3'- -GGcCGUUuUGUGUGUGuGAGCUGcau -5'
23725 5' -49.9 NC_005261.1 + 131589 0.68 0.9848
Target:  5'- aCGGCcGAggccuACGCGCGCGCgCGcACGUAc -3'
miRNA:   3'- gGCCGuUU-----UGUGUGUGUGaGC-UGCAU- -5'
23725 5' -49.9 NC_005261.1 + 52887 0.68 0.982861
Target:  5'- gCGGCGGgucguuaaauAGC-CACACGCgCGACGUc -3'
miRNA:   3'- gGCCGUU----------UUGuGUGUGUGaGCUGCAu -5'
23725 5' -49.9 NC_005261.1 + 52659 0.68 0.982861
Target:  5'- cCCGGCcc--CGCGCGCACuUCGAgCGg- -3'
miRNA:   3'- -GGCCGuuuuGUGUGUGUG-AGCU-GCau -5'
23725 5' -49.9 NC_005261.1 + 28572 0.68 0.982861
Target:  5'- gCCGGgcCGAGGCGCGCgaGCGC-CGGCGg- -3'
miRNA:   3'- -GGCC--GUUUUGUGUG--UGUGaGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 54265 0.68 0.982861
Target:  5'- cCUGGCGccGCGCACACuggacCUCgGGCGUu -3'
miRNA:   3'- -GGCCGUuuUGUGUGUGu----GAG-CUGCAu -5'
23725 5' -49.9 NC_005261.1 + 68157 0.68 0.982861
Target:  5'- gCCGGCuacACGCGCGCggaGCUCGcGCGc- -3'
miRNA:   3'- -GGCCGuuuUGUGUGUG---UGAGC-UGCau -5'
23725 5' -49.9 NC_005261.1 + 124086 0.68 0.982861
Target:  5'- cCCGGCGcccgcguAGCGCGCGCACagGGCc-- -3'
miRNA:   3'- -GGCCGUu------UUGUGUGUGUGagCUGcau -5'
23725 5' -49.9 NC_005261.1 + 114318 0.68 0.982658
Target:  5'- cCCGGCAGuccGGCGCaagguggACugGCUCGAgCGg- -3'
miRNA:   3'- -GGCCGUU---UUGUG-------UGugUGAGCU-GCau -5'
23725 5' -49.9 NC_005261.1 + 22586 0.68 0.980742
Target:  5'- gCGGCGGAGgcgGCGCACGCUgcCGGCGc- -3'
miRNA:   3'- gGCCGUUUUg--UGUGUGUGA--GCUGCau -5'
23725 5' -49.9 NC_005261.1 + 4582 0.68 0.980742
Target:  5'- uCCGGCGGGGCGCcccccgGCGCcagggcucccCUCGGCGUc -3'
miRNA:   3'- -GGCCGUUUUGUG------UGUGu---------GAGCUGCAu -5'
23725 5' -49.9 NC_005261.1 + 17093 0.68 0.980742
Target:  5'- cCCGGUGGugUGCcaGCGCUCGAUGUAg -3'
miRNA:   3'- -GGCCGUUuuGUGugUGUGAGCUGCAU- -5'
23725 5' -49.9 NC_005261.1 + 46990 0.68 0.980295
Target:  5'- gCCGGCAGcGCGCGC-CGCgccgccgcgaugCGGCGg- -3'
miRNA:   3'- -GGCCGUUuUGUGUGuGUGa-----------GCUGCau -5'
23725 5' -49.9 NC_005261.1 + 99860 0.68 0.978432
Target:  5'- aCCGGCcgccGCGCGCcgccgcCGCUCGGCGc- -3'
miRNA:   3'- -GGCCGuuu-UGUGUGu-----GUGAGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 76215 0.68 0.978432
Target:  5'- gCCGcGCcu-GCGcCGCGCGCUUGACGa- -3'
miRNA:   3'- -GGC-CGuuuUGU-GUGUGUGAGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 75370 0.68 0.978432
Target:  5'- gCCGGCGuaccuGGACgcccugGCGCGCGCcaUCGACGa- -3'
miRNA:   3'- -GGCCGU-----UUUG------UGUGUGUG--AGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 71840 0.68 0.978432
Target:  5'- gCGGCGAAGuccgcCACugGCGCUCG-CGc- -3'
miRNA:   3'- gGCCGUUUU-----GUGugUGUGAGCuGCau -5'
23725 5' -49.9 NC_005261.1 + 71266 0.68 0.978432
Target:  5'- gCCGaGCAGcACGCGCGCcagcaGCUUGAgGUGg -3'
miRNA:   3'- -GGC-CGUUuUGUGUGUG-----UGAGCUgCAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.