miRNA display CGI


Results 1 - 20 of 186 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23725 5' -49.9 NC_005261.1 + 150 0.7 0.947801
Target:  5'- gCUGGCAGGGCugGCGgAgUUGGCGg- -3'
miRNA:   3'- -GGCCGUUUUGugUGUgUgAGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 1310 0.7 0.956265
Target:  5'- gCCGGCG--GCgGCACGCGCUCcggGACGc- -3'
miRNA:   3'- -GGCCGUuuUG-UGUGUGUGAG---CUGCau -5'
23725 5' -49.9 NC_005261.1 + 1695 0.66 0.994007
Target:  5'- gCGGCA--GCACGCGCugccgguACUCGcGCGg- -3'
miRNA:   3'- gGCCGUuuUGUGUGUG-------UGAGC-UGCau -5'
23725 5' -49.9 NC_005261.1 + 3564 0.7 0.947801
Target:  5'- gCGGCGccgcuaAGGCGCGCGCGCUCcaccGCGUc -3'
miRNA:   3'- gGCCGU------UUUGUGUGUGUGAGc---UGCAu -5'
23725 5' -49.9 NC_005261.1 + 3872 0.77 0.645103
Target:  5'- gCCGGCGAGcacgGCGCGCA-GCUCGGCGa- -3'
miRNA:   3'- -GGCCGUUU----UGUGUGUgUGAGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 4381 0.66 0.994926
Target:  5'- gCCGcCGAAGCGCACGCGgcCgggCGGCGg- -3'
miRNA:   3'- -GGCcGUUUUGUGUGUGU--Ga--GCUGCau -5'
23725 5' -49.9 NC_005261.1 + 4467 0.67 0.990934
Target:  5'- gCGGCGGcccguCGCGCgGCGCcgCGGCGUAg -3'
miRNA:   3'- gGCCGUUuu---GUGUG-UGUGa-GCUGCAU- -5'
23725 5' -49.9 NC_005261.1 + 4582 0.68 0.980742
Target:  5'- uCCGGCGGGGCGCcccccgGCGCcagggcucccCUCGGCGUc -3'
miRNA:   3'- -GGCCGUUUUGUG------UGUGu---------GAGCUGCAu -5'
23725 5' -49.9 NC_005261.1 + 5138 0.7 0.956265
Target:  5'- gCCGGCGcu-CGCGCGC-CUCGGCc-- -3'
miRNA:   3'- -GGCCGUuuuGUGUGUGuGAGCUGcau -5'
23725 5' -49.9 NC_005261.1 + 5875 0.7 0.952159
Target:  5'- aCGGagaGAGGCugGCugGCUCGGCu-- -3'
miRNA:   3'- gGCCg--UUUUGugUGugUGAGCUGcau -5'
23725 5' -49.9 NC_005261.1 + 5911 0.72 0.91006
Target:  5'- gCCGGCc-GGCugGCuagcuCGCUCGACGg- -3'
miRNA:   3'- -GGCCGuuUUGugUGu----GUGAGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 12322 0.7 0.943189
Target:  5'- gCCGGCGG---GCGCGCGCUUGGCc-- -3'
miRNA:   3'- -GGCCGUUuugUGUGUGUGAGCUGcau -5'
23725 5' -49.9 NC_005261.1 + 14085 0.72 0.896941
Target:  5'- gUCGGCGAAGCACuCGCGgUCGuCGa- -3'
miRNA:   3'- -GGCCGUUUUGUGuGUGUgAGCuGCau -5'
23725 5' -49.9 NC_005261.1 + 15367 0.69 0.970278
Target:  5'- cCCGGCG--GCGCucgGCGCcCUCGGCGc- -3'
miRNA:   3'- -GGCCGUuuUGUG---UGUGuGAGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 15480 0.7 0.952159
Target:  5'- gCGGC-GGACACGCGcCGCUCGcuGCGg- -3'
miRNA:   3'- gGCCGuUUUGUGUGU-GUGAGC--UGCau -5'
23725 5' -49.9 NC_005261.1 + 16104 0.66 0.996303
Target:  5'- aCCGGCGGcggcCACGCACGCgaucaccgCGGCc-- -3'
miRNA:   3'- -GGCCGUUuu--GUGUGUGUGa-------GCUGcau -5'
23725 5' -49.9 NC_005261.1 + 16159 0.67 0.992109
Target:  5'- aCCGGCAGGGCaguaggggGCGCGgGCgUGGCGg- -3'
miRNA:   3'- -GGCCGUUUUG--------UGUGUgUGaGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 16475 0.68 0.9848
Target:  5'- aCGGCGGGACG-ACGCcCUCGugGc- -3'
miRNA:   3'- gGCCGUUUUGUgUGUGuGAGCugCau -5'
23725 5' -49.9 NC_005261.1 + 17093 0.68 0.980742
Target:  5'- cCCGGUGGugUGCcaGCGCUCGAUGUAg -3'
miRNA:   3'- -GGCCGUUuuGUGugUGUGAGCUGCAU- -5'
23725 5' -49.9 NC_005261.1 + 19324 0.67 0.989624
Target:  5'- gCGGCAGucguAGCGCGCACgugccagcaGCUCGGgGg- -3'
miRNA:   3'- gGCCGUU----UUGUGUGUG---------UGAGCUgCau -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.