miRNA display CGI


Results 21 - 40 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23725 5' -49.9 NC_005261.1 + 20113 0.7 0.952159
Target:  5'- gCGGCAAGGCGCGCGgGCcCGcaGCGg- -3'
miRNA:   3'- gGCCGUUUUGUGUGUgUGaGC--UGCau -5'
23725 5' -49.9 NC_005261.1 + 20314 0.67 0.992109
Target:  5'- aCGGCGAcugggccccgAGC-CGCGCACgagCGACGc- -3'
miRNA:   3'- gGCCGUU----------UUGuGUGUGUGa--GCUGCau -5'
23725 5' -49.9 NC_005261.1 + 22586 0.68 0.980742
Target:  5'- gCGGCGGAGgcgGCGCACGCUgcCGGCGc- -3'
miRNA:   3'- gGCCGUUUUg--UGUGUGUGA--GCUGCau -5'
23725 5' -49.9 NC_005261.1 + 23344 0.67 0.990934
Target:  5'- gCGGCGcAGCGCGCGCgugUCGGcCGUGa -3'
miRNA:   3'- gGCCGUuUUGUGUGUGug-AGCU-GCAU- -5'
23725 5' -49.9 NC_005261.1 + 26120 0.66 0.996303
Target:  5'- gCCGGguAAGCAgGCGCGCgguaCGAUc-- -3'
miRNA:   3'- -GGCCguUUUGUgUGUGUGa---GCUGcau -5'
23725 5' -49.9 NC_005261.1 + 28463 0.71 0.921567
Target:  5'- cCCGGC-GGGCACGagccggcCACGCUCGACcuGUAc -3'
miRNA:   3'- -GGCCGuUUUGUGU-------GUGUGAGCUG--CAU- -5'
23725 5' -49.9 NC_005261.1 + 28572 0.68 0.982861
Target:  5'- gCCGGgcCGAGGCGCGCgaGCGC-CGGCGg- -3'
miRNA:   3'- -GGCC--GUUUUGUGUG--UGUGaGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 29347 0.66 0.996303
Target:  5'- uUCGGCGGcGCGgGCgACACUCG-CGa- -3'
miRNA:   3'- -GGCCGUUuUGUgUG-UGUGAGCuGCau -5'
23725 5' -49.9 NC_005261.1 + 29668 0.7 0.960125
Target:  5'- gCCGcGCAGAACGCGCuguggGCGCUgcCGcACGUGg -3'
miRNA:   3'- -GGC-CGUUUUGUGUG-----UGUGA--GC-UGCAU- -5'
23725 5' -49.9 NC_005261.1 + 30141 0.75 0.789188
Target:  5'- gCGGUGGAGCGCGCGCGCcuuagCGGCGc- -3'
miRNA:   3'- gGCCGUUUUGUGUGUGUGa----GCUGCau -5'
23725 5' -49.9 NC_005261.1 + 30332 0.69 0.973208
Target:  5'- gCCGGCGcgGCugGCggccGCGCUCG-CGg- -3'
miRNA:   3'- -GGCCGUuuUGugUG----UGUGAGCuGCau -5'
23725 5' -49.9 NC_005261.1 + 31577 0.68 0.986567
Target:  5'- aCgGGCGcgccGGACGugaGCGCGCUCGGCGc- -3'
miRNA:   3'- -GgCCGU----UUUGUg--UGUGUGAGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 31874 0.66 0.994096
Target:  5'- cCCGGCGccuuCGCGCGCGC-CGAgGc- -3'
miRNA:   3'- -GGCCGUuuu-GUGUGUGUGaGCUgCau -5'
23725 5' -49.9 NC_005261.1 + 32021 0.7 0.947801
Target:  5'- aCCGGCA--GCGCGugcugcCGCGgCUCGACGg- -3'
miRNA:   3'- -GGCCGUuuUGUGU------GUGU-GAGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 32065 0.67 0.990934
Target:  5'- gCCGcGCAGAGCGCGgCGCugggGCUCGGgGa- -3'
miRNA:   3'- -GGC-CGUUUUGUGU-GUG----UGAGCUgCau -5'
23725 5' -49.9 NC_005261.1 + 34033 0.69 0.973208
Target:  5'- aCCGGCGcgGCGCGCGCGCUg------ -3'
miRNA:   3'- -GGCCGUuuUGUGUGUGUGAgcugcau -5'
23725 5' -49.9 NC_005261.1 + 34375 0.68 0.9848
Target:  5'- gCGGCGccGCGCGCAgACgCGGCGc- -3'
miRNA:   3'- gGCCGUuuUGUGUGUgUGaGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 35151 0.66 0.996303
Target:  5'- gCGGCGcAAGCACGCGCAUgcgGACc-- -3'
miRNA:   3'- gGCCGU-UUUGUGUGUGUGag-CUGcau -5'
23725 5' -49.9 NC_005261.1 + 36184 0.68 0.986567
Target:  5'- gCCGGCAGcGCAUGCGCGCUUa----- -3'
miRNA:   3'- -GGCCGUUuUGUGUGUGUGAGcugcau -5'
23725 5' -49.9 NC_005261.1 + 39212 0.66 0.995927
Target:  5'- aCCGGUAGccgccauggcccuCGCGCGCGC-CGGCGa- -3'
miRNA:   3'- -GGCCGUUuu-----------GUGUGUGUGaGCUGCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.