miRNA display CGI


Results 41 - 60 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23725 5' -49.9 NC_005261.1 + 43432 0.72 0.890002
Target:  5'- gCCGGCGGGGa--GCugGCUCGGCGc- -3'
miRNA:   3'- -GGCCGUUUUgugUGugUGAGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 45123 0.73 0.859815
Target:  5'- aCgGGCGcgcuGAUGCugACGCUCGACGg- -3'
miRNA:   3'- -GgCCGUu---UUGUGugUGUGAGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 45600 0.66 0.994926
Target:  5'- aCGGCGAucUAC-CACAC-CGGCGg- -3'
miRNA:   3'- gGCCGUUuuGUGuGUGUGaGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 46812 0.66 0.994096
Target:  5'- gCGcGCGGAugGCGCGCGCcaggCGcGCGUGc -3'
miRNA:   3'- gGC-CGUUUugUGUGUGUGa---GC-UGCAU- -5'
23725 5' -49.9 NC_005261.1 + 46990 0.68 0.980295
Target:  5'- gCCGGCAGcGCGCGC-CGCgccgccgcgaugCGGCGg- -3'
miRNA:   3'- -GGCCGUUuUGUGUGuGUGa-----------GCUGCau -5'
23725 5' -49.9 NC_005261.1 + 47323 0.73 0.859815
Target:  5'- aCCGGgGAGAagGCGCGCGCgUCGGCGa- -3'
miRNA:   3'- -GGCCgUUUUg-UGUGUGUG-AGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 48022 0.72 0.882814
Target:  5'- gCCGGCAGAgcagggcgaggaGCACGCGCGCgCGGuCGg- -3'
miRNA:   3'- -GGCCGUUU------------UGUGUGUGUGaGCU-GCau -5'
23725 5' -49.9 NC_005261.1 + 49223 0.66 0.994096
Target:  5'- gCCGGCGcccAGCGCGCGCAggUCGGCc-- -3'
miRNA:   3'- -GGCCGUu--UUGUGUGUGUg-AGCUGcau -5'
23725 5' -49.9 NC_005261.1 + 49302 0.66 0.995927
Target:  5'- gCGGCGguGAGCGcCGCGCagcccucgagccggaACUCGACGc- -3'
miRNA:   3'- gGCCGU--UUUGU-GUGUG---------------UGAGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 50460 0.69 0.975924
Target:  5'- gCCGGCAGGAgacCACGaggACGCUCG-CGUc -3'
miRNA:   3'- -GGCCGUUUU---GUGUg--UGUGAGCuGCAu -5'
23725 5' -49.9 NC_005261.1 + 52659 0.68 0.982861
Target:  5'- cCCGGCcc--CGCGCGCACuUCGAgCGg- -3'
miRNA:   3'- -GGCCGuuuuGUGUGUGUG-AGCU-GCau -5'
23725 5' -49.9 NC_005261.1 + 52887 0.68 0.982861
Target:  5'- gCGGCGGgucguuaaauAGC-CACACGCgCGACGUc -3'
miRNA:   3'- gGCCGUU----------UUGuGUGUGUGaGCUGCAu -5'
23725 5' -49.9 NC_005261.1 + 53114 0.67 0.990934
Target:  5'- gCGGCGcuGCGCGC-CGCcaacagggCGGCGUAc -3'
miRNA:   3'- gGCCGUuuUGUGUGuGUGa-------GCUGCAU- -5'
23725 5' -49.9 NC_005261.1 + 53855 0.73 0.840803
Target:  5'- uCCGGCAAGcgcuccagcgcggcGCGCGCGCugUCGAguCGa- -3'
miRNA:   3'- -GGCCGUUU--------------UGUGUGUGugAGCU--GCau -5'
23725 5' -49.9 NC_005261.1 + 54265 0.68 0.982861
Target:  5'- cCUGGCGccGCGCACACuggacCUCgGGCGUu -3'
miRNA:   3'- -GGCCGUuuUGUGUGUGu----GAG-CUGCAu -5'
23725 5' -49.9 NC_005261.1 + 54493 0.67 0.990934
Target:  5'- gCGGCAggcgcAAACGCAgGCGCccuccggCGACGg- -3'
miRNA:   3'- gGCCGU-----UUUGUGUgUGUGa------GCUGCau -5'
23725 5' -49.9 NC_005261.1 + 55060 0.67 0.992857
Target:  5'- gCCGGCGAGcucggccgccgaagGCAUGCGCagACUCG-CGUc -3'
miRNA:   3'- -GGCCGUUU--------------UGUGUGUG--UGAGCuGCAu -5'
23725 5' -49.9 NC_005261.1 + 56117 0.66 0.995659
Target:  5'- gCGGCgGGAGCGCGC-CGCagGGCGg- -3'
miRNA:   3'- gGCCG-UUUUGUGUGuGUGagCUGCau -5'
23725 5' -49.9 NC_005261.1 + 56367 0.72 0.882814
Target:  5'- aCCGGCGAGGCGCACGucucccaggaGCUCG-CGg- -3'
miRNA:   3'- -GGCCGUUUUGUGUGUg---------UGAGCuGCau -5'
23725 5' -49.9 NC_005261.1 + 56548 0.7 0.960125
Target:  5'- gCCGGCugguGGGCACguccuucucGCAC-CUCGGCGg- -3'
miRNA:   3'- -GGCCGu---UUUGUG---------UGUGuGAGCUGCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.