miRNA display CGI


Results 61 - 80 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23725 5' -49.9 NC_005261.1 + 57420 0.66 0.994926
Target:  5'- gCCGGCGccgcgagcccaGGAUGCGCACcCgcgCGACGg- -3'
miRNA:   3'- -GGCCGU-----------UUUGUGUGUGuGa--GCUGCau -5'
23725 5' -49.9 NC_005261.1 + 57969 0.72 0.91006
Target:  5'- gCCGGCGAcGCAgGCGCGCgCGGCc-- -3'
miRNA:   3'- -GGCCGUUuUGUgUGUGUGaGCUGcau -5'
23725 5' -49.9 NC_005261.1 + 59259 0.69 0.970278
Target:  5'- gCCGGCGc--CACGCGuCGCaCGGCGUGu -3'
miRNA:   3'- -GGCCGUuuuGUGUGU-GUGaGCUGCAU- -5'
23725 5' -49.9 NC_005261.1 + 60193 0.69 0.972925
Target:  5'- gCGGCGGAgaaguccGCGCGCGCGCUCccgccGCGg- -3'
miRNA:   3'- gGCCGUUU-------UGUGUGUGUGAGc----UGCau -5'
23725 5' -49.9 NC_005261.1 + 61081 0.66 0.996866
Target:  5'- gCCGGCGcu-CACGgGCAgCUCGGCc-- -3'
miRNA:   3'- -GGCCGUuuuGUGUgUGU-GAGCUGcau -5'
23725 5' -49.9 NC_005261.1 + 62296 0.69 0.967125
Target:  5'- gUCGGCGccGCGCGgGCGCgCGGCGg- -3'
miRNA:   3'- -GGCCGUuuUGUGUgUGUGaGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 62463 0.67 0.99316
Target:  5'- gCGGCgGAAGCAgGCACAC-CG-CGUc -3'
miRNA:   3'- gGCCG-UUUUGUgUGUGUGaGCuGCAu -5'
23725 5' -49.9 NC_005261.1 + 62836 0.69 0.963743
Target:  5'- aCCGGCGggGGACugGCGCGCcccgcgccacgCGGCGg- -3'
miRNA:   3'- -GGCCGU--UUUGugUGUGUGa----------GCUGCau -5'
23725 5' -49.9 NC_005261.1 + 62933 0.66 0.996303
Target:  5'- aCCGGCAGgcAGCcC-CGCAC-CGGCGa- -3'
miRNA:   3'- -GGCCGUU--UUGuGuGUGUGaGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 67111 0.66 0.996303
Target:  5'- gCgGGCG--GCGCGCGCAgUgCGGCGg- -3'
miRNA:   3'- -GgCCGUuuUGUGUGUGUgA-GCUGCau -5'
23725 5' -49.9 NC_005261.1 + 68157 0.68 0.982861
Target:  5'- gCCGGCuacACGCGCGCggaGCUCGcGCGc- -3'
miRNA:   3'- -GGCCGuuuUGUGUGUG---UGAGC-UGCau -5'
23725 5' -49.9 NC_005261.1 + 69272 0.67 0.989624
Target:  5'- cCCGGCGAGcCGCcCGCGC-CGACc-- -3'
miRNA:   3'- -GGCCGUUUuGUGuGUGUGaGCUGcau -5'
23725 5' -49.9 NC_005261.1 + 69362 0.69 0.975924
Target:  5'- gCGGCc--GCGCGCGCGCUgGACc-- -3'
miRNA:   3'- gGCCGuuuUGUGUGUGUGAgCUGcau -5'
23725 5' -49.9 NC_005261.1 + 69406 0.71 0.922147
Target:  5'- cCUGGCcucccGACACACGCGC-CGGCGc- -3'
miRNA:   3'- -GGCCGuu---UUGUGUGUGUGaGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 69535 0.68 0.9848
Target:  5'- gCgGGCGcuGGCGCGCGCGCUggggaCGGCGg- -3'
miRNA:   3'- -GgCCGUu-UUGUGUGUGUGA-----GCUGCau -5'
23725 5' -49.9 NC_005261.1 + 70127 0.68 0.9848
Target:  5'- cCCGGCAAAGgccaGCACGCUC-ACGa- -3'
miRNA:   3'- -GGCCGUUUUgug-UGUGUGAGcUGCau -5'
23725 5' -49.9 NC_005261.1 + 70230 0.67 0.989624
Target:  5'- uUGGCGccGCGCGCAaACUCGACc-- -3'
miRNA:   3'- gGCCGUuuUGUGUGUgUGAGCUGcau -5'
23725 5' -49.9 NC_005261.1 + 70817 0.66 0.996866
Target:  5'- gCCGGCGGcccCGgGCGCGC-CGGCGc- -3'
miRNA:   3'- -GGCCGUUuu-GUgUGUGUGaGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 70885 0.67 0.989624
Target:  5'- gCCGGCGGuGCACAUggccguGCACUUGcGCGc- -3'
miRNA:   3'- -GGCCGUUuUGUGUG------UGUGAGC-UGCau -5'
23725 5' -49.9 NC_005261.1 + 71266 0.68 0.978432
Target:  5'- gCCGaGCAGcACGCGCGCcagcaGCUUGAgGUGg -3'
miRNA:   3'- -GGC-CGUUuUGUGUGUG-----UGAGCUgCAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.