miRNA display CGI


Results 81 - 100 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23725 5' -49.9 NC_005261.1 + 71666 0.71 0.938319
Target:  5'- gCGGUAAu-CAUGCGCACgUCGGCGUc -3'
miRNA:   3'- gGCCGUUuuGUGUGUGUG-AGCUGCAu -5'
23725 5' -49.9 NC_005261.1 + 71840 0.68 0.978432
Target:  5'- gCGGCGAAGuccgcCACugGCGCUCG-CGc- -3'
miRNA:   3'- gGCCGUUUU-----GUGugUGUGAGCuGCau -5'
23725 5' -49.9 NC_005261.1 + 72237 0.79 0.559925
Target:  5'- gCCGGCGGuGCGCGCAaAgUCGACGUGa -3'
miRNA:   3'- -GGCCGUUuUGUGUGUgUgAGCUGCAU- -5'
23725 5' -49.9 NC_005261.1 + 72287 0.7 0.943662
Target:  5'- gCCGGCugagguucgcgacguGGGC-CACGCGCUCGAUGc- -3'
miRNA:   3'- -GGCCGu--------------UUUGuGUGUGUGAGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 73487 0.7 0.947801
Target:  5'- gCGGCGcgGCGCGCGgACgCGGCGa- -3'
miRNA:   3'- gGCCGUuuUGUGUGUgUGaGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 73702 0.69 0.973208
Target:  5'- cUCGGCcauGGCGCAggacCGCGgUCGGCGUGc -3'
miRNA:   3'- -GGCCGuu-UUGUGU----GUGUgAGCUGCAU- -5'
23725 5' -49.9 NC_005261.1 + 73761 0.67 0.989624
Target:  5'- aCGGCcgcuucuacGAGGCGCugGC-CUgCGACGUGc -3'
miRNA:   3'- gGCCG---------UUUUGUGugUGuGA-GCUGCAU- -5'
23725 5' -49.9 NC_005261.1 + 74946 0.72 0.896941
Target:  5'- gCGGC---GCGgGCGCGCUCGGCGc- -3'
miRNA:   3'- gGCCGuuuUGUgUGUGUGAGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 75370 0.68 0.978432
Target:  5'- gCCGGCGuaccuGGACgcccugGCGCGCGCcaUCGACGa- -3'
miRNA:   3'- -GGCCGU-----UUUG------UGUGUGUG--AGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 75507 0.66 0.996303
Target:  5'- -gGGCGcuGGAgGCGCACGC-CGugGUc -3'
miRNA:   3'- ggCCGU--UUUgUGUGUGUGaGCugCAu -5'
23725 5' -49.9 NC_005261.1 + 75839 0.68 0.978432
Target:  5'- cCCGGgGAGggGCGCGCGgCGC-CGACGg- -3'
miRNA:   3'- -GGCCgUUU--UGUGUGU-GUGaGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 75875 0.69 0.967125
Target:  5'- aCGGCGccguGGGCGCGCGCAg-CGGCGa- -3'
miRNA:   3'- gGCCGU----UUUGUGUGUGUgaGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 76215 0.68 0.978432
Target:  5'- gCCGcGCcu-GCGcCGCGCGCUUGACGa- -3'
miRNA:   3'- -GGC-CGuuuUGU-GUGUGUGAGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 76434 0.72 0.896941
Target:  5'- gCCGGCGccauGGCGgACGCGCcCGACGg- -3'
miRNA:   3'- -GGCCGUu---UUGUgUGUGUGaGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 76465 0.69 0.969973
Target:  5'- aCGGCGGcgccGGCGCGCGCGCggaccccgagcccUCGGCGc- -3'
miRNA:   3'- gGCCGUU----UUGUGUGUGUG-------------AGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 77077 0.74 0.826041
Target:  5'- gCCGcGCGAGGCGCugGCGCggacgcugcucUCGACGg- -3'
miRNA:   3'- -GGC-CGUUUUGUGugUGUG-----------AGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 80302 0.66 0.996866
Target:  5'- gUGGCGuugAAGCGCucacgguagACGCGCUCGACc-- -3'
miRNA:   3'- gGCCGU---UUUGUG---------UGUGUGAGCUGcau -5'
23725 5' -49.9 NC_005261.1 + 82359 0.66 0.994926
Target:  5'- gUCGGCGucGGCGCGCGCGCgCGcCGc- -3'
miRNA:   3'- -GGCCGUu-UUGUGUGUGUGaGCuGCau -5'
23725 5' -49.9 NC_005261.1 + 83656 0.66 0.995659
Target:  5'- gCGGCGugaggcGGACGCGCGC-CUgGGCGc- -3'
miRNA:   3'- gGCCGU------UUUGUGUGUGuGAgCUGCau -5'
23725 5' -49.9 NC_005261.1 + 84010 0.71 0.927799
Target:  5'- cCCGGCGGGAUGCGCAaAgaCGACGg- -3'
miRNA:   3'- -GGCCGUUUUGUGUGUgUgaGCUGCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.