miRNA display CGI


Results 21 - 40 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23725 5' -49.9 NC_005261.1 + 124086 0.68 0.982861
Target:  5'- cCCGGCGcccgcguAGCGCGCGCACagGGCc-- -3'
miRNA:   3'- -GGCCGUu------UUGUGUGUGUGagCUGcau -5'
23725 5' -49.9 NC_005261.1 + 123163 0.74 0.826041
Target:  5'- -gGGCGGGGCGgGCGCGCgggCGugGUGg -3'
miRNA:   3'- ggCCGUUUUGUgUGUGUGa--GCugCAU- -5'
23725 5' -49.9 NC_005261.1 + 121648 0.7 0.956265
Target:  5'- gCCGGC-GAGCGCGgGCuguccGCgUCGGCGUAg -3'
miRNA:   3'- -GGCCGuUUUGUGUgUG-----UG-AGCUGCAU- -5'
23725 5' -49.9 NC_005261.1 + 120079 0.67 0.988172
Target:  5'- aCGGCuaccccgugGAGGCucgGCACGCGCgCGACGUc -3'
miRNA:   3'- gGCCG---------UUUUG---UGUGUGUGaGCUGCAu -5'
23725 5' -49.9 NC_005261.1 + 118681 0.77 0.666461
Target:  5'- gCGGCGGGcGCugGCGCACgcgCGGCGUGg -3'
miRNA:   3'- gGCCGUUU-UGugUGUGUGa--GCUGCAU- -5'
23725 5' -49.9 NC_005261.1 + 118596 0.67 0.992109
Target:  5'- gCCGccGCGGAGCuCGCGCugUCGGcCGUu -3'
miRNA:   3'- -GGC--CGUUUUGuGUGUGugAGCU-GCAu -5'
23725 5' -49.9 NC_005261.1 + 118494 0.67 0.99316
Target:  5'- gCGGCGcugcGGACccugGCGC-CGCUCGGCGa- -3'
miRNA:   3'- gGCCGU----UUUG----UGUGuGUGAGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 118144 0.66 0.994926
Target:  5'- nCCGGCuc-GCGCAgACGCUgGcCGUc -3'
miRNA:   3'- -GGCCGuuuUGUGUgUGUGAgCuGCAu -5'
23725 5' -49.9 NC_005261.1 + 118126 0.69 0.975924
Target:  5'- gCCGGCu---CGCGC-CGCUCGGCc-- -3'
miRNA:   3'- -GGCCGuuuuGUGUGuGUGAGCUGcau -5'
23725 5' -49.9 NC_005261.1 + 118040 0.66 0.994926
Target:  5'- cCCGGCcgcGACGCcCGCGCU-GGCGg- -3'
miRNA:   3'- -GGCCGuu-UUGUGuGUGUGAgCUGCau -5'
23725 5' -49.9 NC_005261.1 + 117070 0.67 0.99316
Target:  5'- cCUGGUuAAGCACGa--GCUCGGCGa- -3'
miRNA:   3'- -GGCCGuUUUGUGUgugUGAGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 114650 0.72 0.896941
Target:  5'- gCGGCAGu---CAUAUACUUGACGUGg -3'
miRNA:   3'- gGCCGUUuuguGUGUGUGAGCUGCAU- -5'
23725 5' -49.9 NC_005261.1 + 114318 0.68 0.982658
Target:  5'- cCCGGCAGuccGGCGCaagguggACugGCUCGAgCGg- -3'
miRNA:   3'- -GGCCGUU---UUGUG-------UGugUGAGCU-GCau -5'
23725 5' -49.9 NC_005261.1 + 113537 0.67 0.992109
Target:  5'- gCCGGCucgGGGCcguGCGCGCGCUgGACc-- -3'
miRNA:   3'- -GGCCGu--UUUG---UGUGUGUGAgCUGcau -5'
23725 5' -49.9 NC_005261.1 + 112421 0.66 0.993827
Target:  5'- aCgGGCAucugcguguacaucGAGCcCugGCACUgCGACGUGc -3'
miRNA:   3'- -GgCCGU--------------UUUGuGugUGUGA-GCUGCAU- -5'
23725 5' -49.9 NC_005261.1 + 109990 0.7 0.960125
Target:  5'- cCCGGCAGgucgucgugGACACGCcCGC-CGGCGc- -3'
miRNA:   3'- -GGCCGUU---------UUGUGUGuGUGaGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 108720 0.71 0.927799
Target:  5'- aCGGCGAAgaGCGCGCGgGCcagCGGCGg- -3'
miRNA:   3'- gGCCGUUU--UGUGUGUgUGa--GCUGCau -5'
23725 5' -49.9 NC_005261.1 + 108538 0.75 0.759892
Target:  5'- cUCGGUAGgccagcgccgccGACACGCGCACgucgugCGACGUGc -3'
miRNA:   3'- -GGCCGUU------------UUGUGUGUGUGa-----GCUGCAU- -5'
23725 5' -49.9 NC_005261.1 + 108464 0.74 0.829566
Target:  5'- gUCGGCGAGgaucuccgcgucggcGCGCACGCGCgccgCGACGc- -3'
miRNA:   3'- -GGCCGUUU---------------UGUGUGUGUGa---GCUGCau -5'
23725 5' -49.9 NC_005261.1 + 108288 0.66 0.996303
Target:  5'- uCCGGCGuuGCGCuCGCcuGCaCGGCGUc -3'
miRNA:   3'- -GGCCGUuuUGUGuGUG--UGaGCUGCAu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.