miRNA display CGI


Results 41 - 60 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23725 5' -49.9 NC_005261.1 + 108228 0.67 0.992109
Target:  5'- uCCaGCAugGCGCACGUGCcCGGCGUGa -3'
miRNA:   3'- -GGcCGUuuUGUGUGUGUGaGCUGCAU- -5'
23725 5' -49.9 NC_005261.1 + 107867 0.66 0.995659
Target:  5'- gCCGGCc--GCcCGCGCGCUCG-CGc- -3'
miRNA:   3'- -GGCCGuuuUGuGUGUGUGAGCuGCau -5'
23725 5' -49.9 NC_005261.1 + 106936 0.68 0.9848
Target:  5'- gCCaGCGAcACGCGCAC-CUCGGCc-- -3'
miRNA:   3'- -GGcCGUUuUGUGUGUGuGAGCUGcau -5'
23725 5' -49.9 NC_005261.1 + 106112 0.71 0.938319
Target:  5'- gCCGGCGucgccGGCGCGCGCGCgcCGGCa-- -3'
miRNA:   3'- -GGCCGUu----UUGUGUGUGUGa-GCUGcau -5'
23725 5' -49.9 NC_005261.1 + 105391 0.72 0.890002
Target:  5'- gCGcGCuGAcCACGCGcCGCUCGACGUAg -3'
miRNA:   3'- gGC-CGuUUuGUGUGU-GUGAGCUGCAU- -5'
23725 5' -49.9 NC_005261.1 + 105253 0.73 0.843348
Target:  5'- gCGGCAuccGCGCgACAgGCUCGGCGg- -3'
miRNA:   3'- gGCCGUuu-UGUG-UGUgUGAGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 104853 0.75 0.779564
Target:  5'- aCCGcGCGGGuCACGCACGCgUCGAUGUc -3'
miRNA:   3'- -GGC-CGUUUuGUGUGUGUG-AGCUGCAu -5'
23725 5' -49.9 NC_005261.1 + 104203 0.66 0.994926
Target:  5'- aCGGCGuccAGGCGCuCGCGCgCGGCGc- -3'
miRNA:   3'- gGCCGU---UUUGUGuGUGUGaGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 102998 0.71 0.938319
Target:  5'- aCGGCGGccGC-CACGCGCUCcGCGUGg -3'
miRNA:   3'- gGCCGUUu-UGuGUGUGUGAGcUGCAU- -5'
23725 5' -49.9 NC_005261.1 + 102560 0.66 0.994926
Target:  5'- cCCGGC-GGACAC-CGC-CUCGcCGUc -3'
miRNA:   3'- -GGCCGuUUUGUGuGUGuGAGCuGCAu -5'
23725 5' -49.9 NC_005261.1 + 101933 0.72 0.896941
Target:  5'- gCGGUAGAACGcCACGUACUUGGCGa- -3'
miRNA:   3'- gGCCGUUUUGU-GUGUGUGAGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 101104 0.66 0.994096
Target:  5'- gCGGCc--GCGCGCGC-CUUGGCGc- -3'
miRNA:   3'- gGCCGuuuUGUGUGUGuGAGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 100957 0.66 0.994096
Target:  5'- aCGGC---GCGCGCGguCUCGugGa- -3'
miRNA:   3'- gGCCGuuuUGUGUGUguGAGCugCau -5'
23725 5' -49.9 NC_005261.1 + 100724 0.69 0.963743
Target:  5'- gCGGCcgcgccGCGCGCGCGCgCGGCGg- -3'
miRNA:   3'- gGCCGuuu---UGUGUGUGUGaGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 99860 0.68 0.978432
Target:  5'- aCCGGCcgccGCGCGCcgccgcCGCUCGGCGc- -3'
miRNA:   3'- -GGCCGuuu-UGUGUGu-----GUGAGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 99339 0.66 0.996866
Target:  5'- aCCGGCGcgcccagcAGCAgCGCGCACgUGACGa- -3'
miRNA:   3'- -GGCCGUu-------UUGU-GUGUGUGaGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 98269 0.69 0.967125
Target:  5'- -aGGCG--GCGCGCGCGUUCGACGc- -3'
miRNA:   3'- ggCCGUuuUGUGUGUGUGAGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 96998 0.68 0.9848
Target:  5'- gCGGCuAAGCGCGC-CAUUgGGCGg- -3'
miRNA:   3'- gGCCGuUUUGUGUGuGUGAgCUGCau -5'
23725 5' -49.9 NC_005261.1 + 96334 0.67 0.989624
Target:  5'- cCUGGCGcgGcCGCGCGCACcUGACGc- -3'
miRNA:   3'- -GGCCGUuuU-GUGUGUGUGaGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 95645 0.66 0.994096
Target:  5'- -gGGCGAgcgcGACGCGCGgCGCcgCGACGg- -3'
miRNA:   3'- ggCCGUU----UUGUGUGU-GUGa-GCUGCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.