miRNA display CGI


Results 61 - 80 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23725 5' -49.9 NC_005261.1 + 95589 0.68 0.9848
Target:  5'- cCCGGCGAcuCGCAcCGCAC-CGGCc-- -3'
miRNA:   3'- -GGCCGUUuuGUGU-GUGUGaGCUGcau -5'
23725 5' -49.9 NC_005261.1 + 95412 0.71 0.938319
Target:  5'- aCGGCGGAGCAgaacaacgcCACGCuggcCUCGACGc- -3'
miRNA:   3'- gGCCGUUUUGU---------GUGUGu---GAGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 94359 0.68 0.978432
Target:  5'- uCCGGCAcacAGCGCACGgcCGgUCGAUGg- -3'
miRNA:   3'- -GGCCGUu--UUGUGUGU--GUgAGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 93732 0.76 0.729483
Target:  5'- gCGGCGGcAGCGCGCGCuucguACUCGGCGg- -3'
miRNA:   3'- gGCCGUU-UUGUGUGUG-----UGAGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 93575 0.84 0.343189
Target:  5'- gCGGCGGGACGCgaucGCGCGCUCGGCGa- -3'
miRNA:   3'- gGCCGUUUUGUG----UGUGUGAGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 93495 0.72 0.903629
Target:  5'- gCGGCGAAGCGCGCGaACcgCGGCGc- -3'
miRNA:   3'- gGCCGUUUUGUGUGUgUGa-GCUGCau -5'
23725 5' -49.9 NC_005261.1 + 93375 0.7 0.942713
Target:  5'- gCCGGCGuGAGCaggagguugcagaGCACGCACUCGcccguCGUGc -3'
miRNA:   3'- -GGCCGU-UUUG-------------UGUGUGUGAGCu----GCAU- -5'
23725 5' -49.9 NC_005261.1 + 92956 0.67 0.989624
Target:  5'- cCCGGaCAAAggcuGCGCACGCGgUUGGCu-- -3'
miRNA:   3'- -GGCC-GUUU----UGUGUGUGUgAGCUGcau -5'
23725 5' -49.9 NC_005261.1 + 92156 0.69 0.970278
Target:  5'- cUCGGCGA---GCGCGCGCUCGGUGg- -3'
miRNA:   3'- -GGCCGUUuugUGUGUGUGAGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 92071 0.72 0.882814
Target:  5'- cCCGGUAGAacaGCACACGCGCgucgCGcACGc- -3'
miRNA:   3'- -GGCCGUUU---UGUGUGUGUGa---GC-UGCau -5'
23725 5' -49.9 NC_005261.1 + 91915 0.66 0.994926
Target:  5'- cCCGGCGcaccacGAGCACGaacaucgucugcCACACgugggCGACGa- -3'
miRNA:   3'- -GGCCGU------UUUGUGU------------GUGUGa----GCUGCau -5'
23725 5' -49.9 NC_005261.1 + 90894 0.69 0.970278
Target:  5'- aCGGCAugGCGCgGCAgGuCUCGGCGg- -3'
miRNA:   3'- gGCCGUuuUGUG-UGUgU-GAGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 90395 0.73 0.873108
Target:  5'- gCCGGCGGGGCugGCgcccgGCGCggacuacgcgacguUCGACGUGg -3'
miRNA:   3'- -GGCCGUUUUGugUG-----UGUG--------------AGCUGCAU- -5'
23725 5' -49.9 NC_005261.1 + 90213 0.68 0.9848
Target:  5'- gCGGCGGAGCGCcCuCGCgCGGCGg- -3'
miRNA:   3'- gGCCGUUUUGUGuGuGUGaGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 89584 0.69 0.970278
Target:  5'- aCGGCcgucuACgACGCGCgACUCGACGg- -3'
miRNA:   3'- gGCCGuuu--UG-UGUGUG-UGAGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 89087 0.67 0.988172
Target:  5'- aCCGGCugcggcccGGGCGCGCugGCgCGcGCGUGg -3'
miRNA:   3'- -GGCCGu-------UUUGUGUGugUGaGC-UGCAU- -5'
23725 5' -49.9 NC_005261.1 + 88814 0.7 0.960125
Target:  5'- gCCGGCGGcggggcggcGGCGCGCGCcgGCcCGGCGUc -3'
miRNA:   3'- -GGCCGUU---------UUGUGUGUG--UGaGCUGCAu -5'
23725 5' -49.9 NC_005261.1 + 88484 0.71 0.927799
Target:  5'- gCCGcGcCGGAGCGCGcCGCGCUCGACc-- -3'
miRNA:   3'- -GGC-C-GUUUUGUGU-GUGUGAGCUGcau -5'
23725 5' -49.9 NC_005261.1 + 88376 0.71 0.916234
Target:  5'- aCGGCcGAGCGCGCGCccaagguguacCUCGACGg- -3'
miRNA:   3'- gGCCGuUUUGUGUGUGu----------GAGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 88196 0.7 0.956265
Target:  5'- gCCGGCGAGGCGgGcCGCGC-CGGCa-- -3'
miRNA:   3'- -GGCCGUUUUGUgU-GUGUGaGCUGcau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.