miRNA display CGI


Results 41 - 60 of 186 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23725 5' -49.9 NC_005261.1 + 108538 0.75 0.759892
Target:  5'- cUCGGUAGgccagcgccgccGACACGCGCACgucgugCGACGUGc -3'
miRNA:   3'- -GGCCGUU------------UUGUGUGUGUGa-----GCUGCAU- -5'
23725 5' -49.9 NC_005261.1 + 93732 0.76 0.729483
Target:  5'- gCGGCGGcAGCGCGCGCuucguACUCGGCGg- -3'
miRNA:   3'- gGCCGUU-UUGUGUGUG-----UGAGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 118681 0.77 0.666461
Target:  5'- gCGGCGGGcGCugGCGCACgcgCGGCGUGg -3'
miRNA:   3'- gGCCGUUU-UGugUGUGUGa--GCUGCAU- -5'
23725 5' -49.9 NC_005261.1 + 3872 0.77 0.645103
Target:  5'- gCCGGCGAGcacgGCGCGCA-GCUCGGCGa- -3'
miRNA:   3'- -GGCCGUUU----UGUGUGUgUGAGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 72237 0.79 0.559925
Target:  5'- gCCGGCGGuGCGCGCAaAgUCGACGUGa -3'
miRNA:   3'- -GGCCGUUuUGUGUGUgUgAGCUGCAU- -5'
23725 5' -49.9 NC_005261.1 + 45123 0.73 0.859815
Target:  5'- aCgGGCGcgcuGAUGCugACGCUCGACGg- -3'
miRNA:   3'- -GgCCGUu---UUGUGugUGUGAGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 47323 0.73 0.859815
Target:  5'- aCCGGgGAGAagGCGCGCGCgUCGGCGa- -3'
miRNA:   3'- -GGCCgUUUUg-UGUGUGUG-AGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 93495 0.72 0.903629
Target:  5'- gCGGCGAAGCGCGCGaACcgCGGCGc- -3'
miRNA:   3'- gGCCGUUUUGUGUGUgUGa-GCUGCau -5'
23725 5' -49.9 NC_005261.1 + 130524 0.72 0.903629
Target:  5'- gCUGGcCGAAGCGCGCcCGCUCGucGCGUu -3'
miRNA:   3'- -GGCC-GUUUUGUGUGuGUGAGC--UGCAu -5'
23725 5' -49.9 NC_005261.1 + 74946 0.72 0.896941
Target:  5'- gCGGC---GCGgGCGCGCUCGGCGc- -3'
miRNA:   3'- gGCCGuuuUGUgUGUGUGAGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 101933 0.72 0.896941
Target:  5'- gCGGUAGAACGcCACGUACUUGGCGa- -3'
miRNA:   3'- gGCCGUUUUGU-GUGUGUGAGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 76434 0.72 0.896941
Target:  5'- gCCGGCGccauGGCGgACGCGCcCGACGg- -3'
miRNA:   3'- -GGCCGUu---UUGUgUGUGUGaGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 114650 0.72 0.896941
Target:  5'- gCGGCAGu---CAUAUACUUGACGUGg -3'
miRNA:   3'- gGCCGUUuuguGUGUGUGAGCUGCAU- -5'
23725 5' -49.9 NC_005261.1 + 14085 0.72 0.896941
Target:  5'- gUCGGCGAAGCACuCGCGgUCGuCGa- -3'
miRNA:   3'- -GGCCGUUUUGUGuGUGUgAGCuGCau -5'
23725 5' -49.9 NC_005261.1 + 105391 0.72 0.890002
Target:  5'- gCGcGCuGAcCACGCGcCGCUCGACGUAg -3'
miRNA:   3'- gGC-CGuUUuGUGUGU-GUGAGCUGCAU- -5'
23725 5' -49.9 NC_005261.1 + 43432 0.72 0.890002
Target:  5'- gCCGGCGGGGa--GCugGCUCGGCGc- -3'
miRNA:   3'- -GGCCGUUUUgugUGugUGAGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 92071 0.72 0.882814
Target:  5'- cCCGGUAGAacaGCACACGCGCgucgCGcACGc- -3'
miRNA:   3'- -GGCCGUUU---UGUGUGUGUGa---GC-UGCau -5'
23725 5' -49.9 NC_005261.1 + 56367 0.72 0.882814
Target:  5'- aCCGGCGAGGCGCACGucucccaggaGCUCG-CGg- -3'
miRNA:   3'- -GGCCGUUUUGUGUGUg---------UGAGCuGCau -5'
23725 5' -49.9 NC_005261.1 + 48022 0.72 0.882814
Target:  5'- gCCGGCAGAgcagggcgaggaGCACGCGCGCgCGGuCGg- -3'
miRNA:   3'- -GGCCGUUU------------UGUGUGUGUGaGCU-GCau -5'
23725 5' -49.9 NC_005261.1 + 90395 0.73 0.873108
Target:  5'- gCCGGCGGGGCugGCgcccgGCGCggacuacgcgacguUCGACGUGg -3'
miRNA:   3'- -GGCCGUUUUGugUG-----UGUG--------------AGCUGCAU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.