miRNA display CGI


Results 101 - 120 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23725 5' -49.9 NC_005261.1 + 88196 0.7 0.956265
Target:  5'- gCCGGCGAGGCGgGcCGCGC-CGGCa-- -3'
miRNA:   3'- -GGCCGUUUUGUgU-GUGUGaGCUGcau -5'
23725 5' -49.9 NC_005261.1 + 121648 0.7 0.956265
Target:  5'- gCCGGC-GAGCGCGgGCuguccGCgUCGGCGUAg -3'
miRNA:   3'- -GGCCGuUUUGUGUgUG-----UG-AGCUGCAU- -5'
23725 5' -49.9 NC_005261.1 + 1310 0.7 0.956265
Target:  5'- gCCGGCG--GCgGCACGCGCUCcggGACGc- -3'
miRNA:   3'- -GGCCGUuuUG-UGUGUGUGAG---CUGCau -5'
23725 5' -49.9 NC_005261.1 + 5138 0.7 0.956265
Target:  5'- gCCGGCGcu-CGCGCGC-CUCGGCc-- -3'
miRNA:   3'- -GGCCGUuuuGUGUGUGuGAGCUGcau -5'
23725 5' -49.9 NC_005261.1 + 125963 0.7 0.956265
Target:  5'- aCGGCA--GCACuu-CGCUCGGCGa- -3'
miRNA:   3'- gGCCGUuuUGUGuguGUGAGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 150 0.7 0.947801
Target:  5'- gCUGGCAGGGCugGCGgAgUUGGCGg- -3'
miRNA:   3'- -GGCCGUUUUGugUGUgUgAGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 72287 0.7 0.943662
Target:  5'- gCCGGCugagguucgcgacguGGGC-CACGCGCUCGAUGc- -3'
miRNA:   3'- -GGCCGu--------------UUUGuGUGUGUGAGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 88376 0.71 0.916234
Target:  5'- aCGGCcGAGCGCGCGCccaagguguacCUCGACGg- -3'
miRNA:   3'- gGCCGuUUUGUGUGUGu----------GAGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 28463 0.71 0.921567
Target:  5'- cCCGGC-GGGCACGagccggcCACGCUCGACcuGUAc -3'
miRNA:   3'- -GGCCGuUUUGUGU-------GUGUGAGCUG--CAU- -5'
23725 5' -49.9 NC_005261.1 + 69406 0.71 0.922147
Target:  5'- cCUGGCcucccGACACACGCGC-CGGCGc- -3'
miRNA:   3'- -GGCCGuu---UUGUGUGUGUGaGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 84010 0.71 0.927799
Target:  5'- cCCGGCGGGAUGCGCAaAgaCGACGg- -3'
miRNA:   3'- -GGCCGUUUUGUGUGUgUgaGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 88484 0.71 0.927799
Target:  5'- gCCGcGcCGGAGCGCGcCGCGCUCGACc-- -3'
miRNA:   3'- -GGC-C-GUUUUGUGU-GUGUGAGCUGcau -5'
23725 5' -49.9 NC_005261.1 + 108720 0.71 0.927799
Target:  5'- aCGGCGAAgaGCGCGCGgGCcagCGGCGg- -3'
miRNA:   3'- gGCCGUUU--UGUGUGUgUGa--GCUGCau -5'
23725 5' -49.9 NC_005261.1 + 86977 0.71 0.933189
Target:  5'- uCCGGCGGcAGCACgGCGCcCUCGugGc- -3'
miRNA:   3'- -GGCCGUU-UUGUG-UGUGuGAGCugCau -5'
23725 5' -49.9 NC_005261.1 + 71666 0.71 0.938319
Target:  5'- gCGGUAAu-CAUGCGCACgUCGGCGUc -3'
miRNA:   3'- gGCCGUUuuGUGUGUGUG-AGCUGCAu -5'
23725 5' -49.9 NC_005261.1 + 95412 0.71 0.938319
Target:  5'- aCGGCGGAGCAgaacaacgcCACGCuggcCUCGACGc- -3'
miRNA:   3'- gGCCGUUUUGU---------GUGUGu---GAGCUGCau -5'
23725 5' -49.9 NC_005261.1 + 106112 0.71 0.938319
Target:  5'- gCCGGCGucgccGGCGCGCGCGCgcCGGCa-- -3'
miRNA:   3'- -GGCCGUu----UUGUGUGUGUGa-GCUGcau -5'
23725 5' -49.9 NC_005261.1 + 102998 0.71 0.938319
Target:  5'- aCGGCGGccGC-CACGCGCUCcGCGUGg -3'
miRNA:   3'- gGCCGUUu-UGuGUGUGUGAGcUGCAU- -5'
23725 5' -49.9 NC_005261.1 + 93375 0.7 0.942713
Target:  5'- gCCGGCGuGAGCaggagguugcagaGCACGCACUCGcccguCGUGc -3'
miRNA:   3'- -GGCCGU-UUUG-------------UGUGUGUGAGCu----GCAU- -5'
23725 5' -49.9 NC_005261.1 + 12322 0.7 0.943189
Target:  5'- gCCGGCGG---GCGCGCGCUUGGCc-- -3'
miRNA:   3'- -GGCCGUUuugUGUGUGUGAGCUGcau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.