Results 21 - 40 of 186 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23725 | 5' | -49.9 | NC_005261.1 | + | 43432 | 0.72 | 0.890002 |
Target: 5'- gCCGGCGGGGa--GCugGCUCGGCGc- -3' miRNA: 3'- -GGCCGUUUUgugUGugUGAGCUGCau -5' |
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23725 | 5' | -49.9 | NC_005261.1 | + | 92071 | 0.72 | 0.882814 |
Target: 5'- cCCGGUAGAacaGCACACGCGCgucgCGcACGc- -3' miRNA: 3'- -GGCCGUUU---UGUGUGUGUGa---GC-UGCau -5' |
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23725 | 5' | -49.9 | NC_005261.1 | + | 77077 | 0.74 | 0.826041 |
Target: 5'- gCCGcGCGAGGCGCugGCGCggacgcugcucUCGACGg- -3' miRNA: 3'- -GGC-CGUUUUGUGugUGUG-----------AGCUGCau -5' |
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23725 | 5' | -49.9 | NC_005261.1 | + | 30141 | 0.75 | 0.789188 |
Target: 5'- gCGGUGGAGCGCGCGCGCcuuagCGGCGc- -3' miRNA: 3'- gGCCGUUUUGUGUGUGUGa----GCUGCau -5' |
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23725 | 5' | -49.9 | NC_005261.1 | + | 104853 | 0.75 | 0.779564 |
Target: 5'- aCCGcGCGGGuCACGCACGCgUCGAUGUc -3' miRNA: 3'- -GGC-CGUUUuGUGUGUGUG-AGCUGCAu -5' |
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23725 | 5' | -49.9 | NC_005261.1 | + | 108538 | 0.75 | 0.759892 |
Target: 5'- cUCGGUAGgccagcgccgccGACACGCGCACgucgugCGACGUGc -3' miRNA: 3'- -GGCCGUU------------UUGUGUGUGUGa-----GCUGCAU- -5' |
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23725 | 5' | -49.9 | NC_005261.1 | + | 93732 | 0.76 | 0.729483 |
Target: 5'- gCGGCGGcAGCGCGCGCuucguACUCGGCGg- -3' miRNA: 3'- gGCCGUU-UUGUGUGUG-----UGAGCUGCau -5' |
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23725 | 5' | -49.9 | NC_005261.1 | + | 118681 | 0.77 | 0.666461 |
Target: 5'- gCGGCGGGcGCugGCGCACgcgCGGCGUGg -3' miRNA: 3'- gGCCGUUU-UGugUGUGUGa--GCUGCAU- -5' |
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23725 | 5' | -49.9 | NC_005261.1 | + | 3872 | 0.77 | 0.645103 |
Target: 5'- gCCGGCGAGcacgGCGCGCA-GCUCGGCGa- -3' miRNA: 3'- -GGCCGUUU----UGUGUGUgUGAGCUGCau -5' |
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23725 | 5' | -49.9 | NC_005261.1 | + | 72237 | 0.79 | 0.559925 |
Target: 5'- gCCGGCGGuGCGCGCAaAgUCGACGUGa -3' miRNA: 3'- -GGCCGUUuUGUGUGUgUgAGCUGCAU- -5' |
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23725 | 5' | -49.9 | NC_005261.1 | + | 123163 | 0.74 | 0.826041 |
Target: 5'- -gGGCGGGGCGgGCGCGCgggCGugGUGg -3' miRNA: 3'- ggCCGUUUUGUgUGUGUGa--GCugCAU- -5' |
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23725 | 5' | -49.9 | NC_005261.1 | + | 108464 | 0.74 | 0.829566 |
Target: 5'- gUCGGCGAGgaucuccgcgucggcGCGCACGCGCgccgCGACGc- -3' miRNA: 3'- -GGCCGUUU---------------UGUGUGUGUGa---GCUGCau -5' |
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23725 | 5' | -49.9 | NC_005261.1 | + | 56367 | 0.72 | 0.882814 |
Target: 5'- aCCGGCGAGGCGCACGucucccaggaGCUCG-CGg- -3' miRNA: 3'- -GGCCGUUUUGUGUGUg---------UGAGCuGCau -5' |
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23725 | 5' | -49.9 | NC_005261.1 | + | 48022 | 0.72 | 0.882814 |
Target: 5'- gCCGGCAGAgcagggcgaggaGCACGCGCGCgCGGuCGg- -3' miRNA: 3'- -GGCCGUUU------------UGUGUGUGUGaGCU-GCau -5' |
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23725 | 5' | -49.9 | NC_005261.1 | + | 90395 | 0.73 | 0.873108 |
Target: 5'- gCCGGCGGGGCugGCgcccgGCGCggacuacgcgacguUCGACGUGg -3' miRNA: 3'- -GGCCGUUUUGugUG-----UGUG--------------AGCUGCAU- -5' |
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23725 | 5' | -49.9 | NC_005261.1 | + | 47323 | 0.73 | 0.859815 |
Target: 5'- aCCGGgGAGAagGCGCGCGCgUCGGCGa- -3' miRNA: 3'- -GGCCgUUUUg-UGUGUGUG-AGCUGCau -5' |
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23725 | 5' | -49.9 | NC_005261.1 | + | 45123 | 0.73 | 0.859815 |
Target: 5'- aCgGGCGcgcuGAUGCugACGCUCGACGg- -3' miRNA: 3'- -GgCCGUu---UUGUGugUGUGAGCUGCau -5' |
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23725 | 5' | -49.9 | NC_005261.1 | + | 129973 | 0.73 | 0.85169 |
Target: 5'- gCCaGGCAAGugucGCGCAUGCGCUgGGCGUc -3' miRNA: 3'- -GG-CCGUUU----UGUGUGUGUGAgCUGCAu -5' |
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23725 | 5' | -49.9 | NC_005261.1 | + | 105253 | 0.73 | 0.843348 |
Target: 5'- gCGGCAuccGCGCgACAgGCUCGGCGg- -3' miRNA: 3'- gGCCGUuu-UGUG-UGUgUGAGCUGCau -5' |
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23725 | 5' | -49.9 | NC_005261.1 | + | 53855 | 0.73 | 0.840803 |
Target: 5'- uCCGGCAAGcgcuccagcgcggcGCGCGCGCugUCGAguCGa- -3' miRNA: 3'- -GGCCGUUU--------------UGUGUGUGugAGCU--GCau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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