miRNA display CGI


Results 1 - 20 of 549 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23726 3' -61.3 NC_005261.1 + 98345 0.66 0.676239
Target:  5'- gUGuCGaCGCGGgGGCGgGGgugggcGCGGGCUCu -3'
miRNA:   3'- aAC-GC-GCGCCgCCGUgCC------UGCUUGGG- -5'
23726 3' -61.3 NC_005261.1 + 24128 0.66 0.676239
Target:  5'- -cGgGgGUGGgGGCugGGugGGcgggGCUCa -3'
miRNA:   3'- aaCgCgCGCCgCCGugCCugCU----UGGG- -5'
23726 3' -61.3 NC_005261.1 + 78839 0.66 0.676239
Target:  5'- cUGCGguaCGcCGGCGGCGCccgccgccGGagcGCGAGCCg -3'
miRNA:   3'- aACGC---GC-GCCGCCGUG--------CC---UGCUUGGg -5'
23726 3' -61.3 NC_005261.1 + 4572 0.66 0.676239
Target:  5'- -cGCGgGCGGgucCGGCG-GGGCGcccCCCg -3'
miRNA:   3'- aaCGCgCGCC---GCCGUgCCUGCuu-GGG- -5'
23726 3' -61.3 NC_005261.1 + 68575 0.66 0.676239
Target:  5'- -aGCGCGUcgccgccgaGGCGGgcCGCGGgaGCGGGgCCg -3'
miRNA:   3'- aaCGCGCG---------CCGCC--GUGCC--UGCUUgGG- -5'
23726 3' -61.3 NC_005261.1 + 103959 0.66 0.676239
Target:  5'- -cGCGacCGCGGCGGCcgccacACGGAaGcGCUCg -3'
miRNA:   3'- aaCGC--GCGCCGCCG------UGCCUgCuUGGG- -5'
23726 3' -61.3 NC_005261.1 + 88143 0.66 0.676239
Target:  5'- -cGcCGCGCGGgGGCGCcccGGccGCGcAGCCg -3'
miRNA:   3'- aaC-GCGCGCCgCCGUG---CC--UGC-UUGGg -5'
23726 3' -61.3 NC_005261.1 + 95489 0.66 0.676239
Target:  5'- -gGCcCGCGGCGGCAU---CG-ACCCg -3'
miRNA:   3'- aaCGcGCGCCGCCGUGccuGCuUGGG- -5'
23726 3' -61.3 NC_005261.1 + 68972 0.66 0.676239
Target:  5'- gUGCGCGCcaccGCGGCccuuuuCGGgccgcGCGGGCgCCg -3'
miRNA:   3'- aACGCGCGc---CGCCGu-----GCC-----UGCUUG-GG- -5'
23726 3' -61.3 NC_005261.1 + 30379 0.66 0.676239
Target:  5'- -cGgGCGCcGCGGCGCgGGugGAGgUg -3'
miRNA:   3'- aaCgCGCGcCGCCGUG-CCugCUUgGg -5'
23726 3' -61.3 NC_005261.1 + 75656 0.66 0.676239
Target:  5'- -gGCGCGUuccuGGCGcGCGCGca-GAACCUc -3'
miRNA:   3'- aaCGCGCG----CCGC-CGUGCcugCUUGGG- -5'
23726 3' -61.3 NC_005261.1 + 26893 0.66 0.676239
Target:  5'- -gGgGgGCGGgGGCGCaGAUGGccaacaaaaACCCa -3'
miRNA:   3'- aaCgCgCGCCgCCGUGcCUGCU---------UGGG- -5'
23726 3' -61.3 NC_005261.1 + 21004 0.66 0.676239
Target:  5'- -cGCGCGCcuuGGgGGCGUGacacCGAGCCCu -3'
miRNA:   3'- aaCGCGCG---CCgCCGUGCcu--GCUUGGG- -5'
23726 3' -61.3 NC_005261.1 + 13136 0.66 0.676239
Target:  5'- -cGCGUGUGGuCGGUgACGGcGCGcACCa -3'
miRNA:   3'- aaCGCGCGCC-GCCG-UGCC-UGCuUGGg -5'
23726 3' -61.3 NC_005261.1 + 127377 0.66 0.676239
Target:  5'- aUGuCGUugGCGGCGGC---GAgGAGCCCg -3'
miRNA:   3'- aAC-GCG--CGCCGCCGugcCUgCUUGGG- -5'
23726 3' -61.3 NC_005261.1 + 111608 0.66 0.676239
Target:  5'- gUGgGCGCGGCugGGCuGCGG-CGccGugCCg -3'
miRNA:   3'- aACgCGCGCCG--CCG-UGCCuGC--UugGG- -5'
23726 3' -61.3 NC_005261.1 + 104411 0.66 0.66635
Target:  5'- -aGCGCGCcgaaacGGCGccGCACaGcuugaGCGGGCCCg -3'
miRNA:   3'- aaCGCGCG------CCGC--CGUGcC-----UGCUUGGG- -5'
23726 3' -61.3 NC_005261.1 + 70641 0.66 0.66635
Target:  5'- -aGCGcCGCGGCgcugagguucGGCgccGCGGccGCGGGCCg -3'
miRNA:   3'- aaCGC-GCGCCG----------CCG---UGCC--UGCUUGGg -5'
23726 3' -61.3 NC_005261.1 + 1306 0.66 0.66635
Target:  5'- -cGuCGCcgGCGGCGGCACgcgcuccgGGACGccGCCg -3'
miRNA:   3'- aaC-GCG--CGCCGCCGUG--------CCUGCu-UGGg -5'
23726 3' -61.3 NC_005261.1 + 137116 0.66 0.66635
Target:  5'- --cCGCGCGGCGGCGuuuugUGGAagGAGCg- -3'
miRNA:   3'- aacGCGCGCCGCCGU-----GCCUg-CUUGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.