miRNA display CGI


Results 1 - 18 of 18 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23726 5' -55.7 NC_005261.1 + 56064 0.66 0.890002
Target:  5'- gGGGGCgccCUgggCGAGCaguccGC-UCGCUACu -3'
miRNA:   3'- aCCCCGa--GAa--GUUCGa----CGcAGCGAUG- -5'
23726 5' -55.7 NC_005261.1 + 11845 0.66 0.890002
Target:  5'- cGcGGGCgcgCguucgCGAGCgcgaGCGUCaGCUGCg -3'
miRNA:   3'- aC-CCCGa--Gaa---GUUCGa---CGCAG-CGAUG- -5'
23726 5' -55.7 NC_005261.1 + 67075 0.66 0.882973
Target:  5'- gGGGGCUCgcUCGGGCgguccaugGCGcgacgCGgUGCg -3'
miRNA:   3'- aCCCCGAGa-AGUUCGa-------CGCa----GCgAUG- -5'
23726 5' -55.7 NC_005261.1 + 53504 0.66 0.860508
Target:  5'- aGGGGCUCguuaUCGcgcccgaaGGCUGUGgcugccgUGUUGCg -3'
miRNA:   3'- aCCCCGAGa---AGU--------UCGACGCa------GCGAUG- -5'
23726 5' -55.7 NC_005261.1 + 69961 0.66 0.85258
Target:  5'- aGGGGC-CUcCGGGC-GCG-CGCUAg -3'
miRNA:   3'- aCCCCGaGAaGUUCGaCGCaGCGAUg -5'
23726 5' -55.7 NC_005261.1 + 98101 0.67 0.844443
Target:  5'- gGGGGCgCggCGGGCgGCGagGCUGg -3'
miRNA:   3'- aCCCCGaGaaGUUCGaCGCagCGAUg -5'
23726 5' -55.7 NC_005261.1 + 84124 0.67 0.82757
Target:  5'- gGGGGCag--CGGGCgGgGUCGCUGg -3'
miRNA:   3'- aCCCCGagaaGUUCGaCgCAGCGAUg -5'
23726 5' -55.7 NC_005261.1 + 1297 0.67 0.809954
Target:  5'- cGGGGCUCccgUCGccGGCgGCGgcacgCGCUcCg -3'
miRNA:   3'- aCCCCGAGa--AGU--UCGaCGCa----GCGAuG- -5'
23726 5' -55.7 NC_005261.1 + 24414 0.67 0.809954
Target:  5'- gGGGGCUCggaUCcucGGUUGCGgucCGCgGCg -3'
miRNA:   3'- aCCCCGAGa--AGu--UCGACGCa--GCGaUG- -5'
23726 5' -55.7 NC_005261.1 + 60426 0.68 0.791663
Target:  5'- cGGGGC-CgcCGcGCUcGCGUCGCUcACg -3'
miRNA:   3'- aCCCCGaGaaGUuCGA-CGCAGCGA-UG- -5'
23726 5' -55.7 NC_005261.1 + 60143 0.68 0.791663
Target:  5'- -cGGGCUCc-CAGGCgcugcagGCGcCGCUGCc -3'
miRNA:   3'- acCCCGAGaaGUUCGa------CGCaGCGAUG- -5'
23726 5' -55.7 NC_005261.1 + 121516 0.68 0.75335
Target:  5'- aUGGGGCcgUCgauggCGAGCUccuCGUCGCUGu -3'
miRNA:   3'- -ACCCCG--AGaa---GUUCGAc--GCAGCGAUg -5'
23726 5' -55.7 NC_005261.1 + 128814 0.69 0.713249
Target:  5'- cGGGGCUCgcgCugcGGCUGaCGcUCGCgcgGCu -3'
miRNA:   3'- aCCCCGAGaa-Gu--UCGAC-GC-AGCGa--UG- -5'
23726 5' -55.7 NC_005261.1 + 32147 0.7 0.661565
Target:  5'- gGGGGCUC----GGC-GCGcCGCUGCg -3'
miRNA:   3'- aCCCCGAGaaguUCGaCGCaGCGAUG- -5'
23726 5' -55.7 NC_005261.1 + 73145 0.71 0.630182
Target:  5'- -cGGGCUCgcgccgcCAGGCgGCGUUGUUGCu -3'
miRNA:   3'- acCCCGAGaa-----GUUCGaCGCAGCGAUG- -5'
23726 5' -55.7 NC_005261.1 + 21685 0.74 0.448944
Target:  5'- cUGGGGCUC---GAGC-GCGUCGCggGCg -3'
miRNA:   3'- -ACCCCGAGaagUUCGaCGCAGCGa-UG- -5'
23726 5' -55.7 NC_005261.1 + 68562 0.78 0.259881
Target:  5'- cGcGGGCUCUUUGAGC-GCGUCGCcGCc -3'
miRNA:   3'- aC-CCCGAGAAGUUCGaCGCAGCGaUG- -5'
23726 5' -55.7 NC_005261.1 + 12783 0.84 0.120251
Target:  5'- gGGGGCUCgucggCGAGCUcgucgucgGCGUCGCUGCc -3'
miRNA:   3'- aCCCCGAGaa---GUUCGA--------CGCAGCGAUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.