Results 1 - 18 of 18 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23726 | 5' | -55.7 | NC_005261.1 | + | 12783 | 0.84 | 0.120251 |
Target: 5'- gGGGGCUCgucggCGAGCUcgucgucgGCGUCGCUGCc -3' miRNA: 3'- aCCCCGAGaa---GUUCGA--------CGCAGCGAUG- -5' |
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23726 | 5' | -55.7 | NC_005261.1 | + | 68562 | 0.78 | 0.259881 |
Target: 5'- cGcGGGCUCUUUGAGC-GCGUCGCcGCc -3' miRNA: 3'- aC-CCCGAGAAGUUCGaCGCAGCGaUG- -5' |
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23726 | 5' | -55.7 | NC_005261.1 | + | 21685 | 0.74 | 0.448944 |
Target: 5'- cUGGGGCUC---GAGC-GCGUCGCggGCg -3' miRNA: 3'- -ACCCCGAGaagUUCGaCGCAGCGa-UG- -5' |
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23726 | 5' | -55.7 | NC_005261.1 | + | 73145 | 0.71 | 0.630182 |
Target: 5'- -cGGGCUCgcgccgcCAGGCgGCGUUGUUGCu -3' miRNA: 3'- acCCCGAGaa-----GUUCGaCGCAGCGAUG- -5' |
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23726 | 5' | -55.7 | NC_005261.1 | + | 32147 | 0.7 | 0.661565 |
Target: 5'- gGGGGCUC----GGC-GCGcCGCUGCg -3' miRNA: 3'- aCCCCGAGaaguUCGaCGCaGCGAUG- -5' |
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23726 | 5' | -55.7 | NC_005261.1 | + | 128814 | 0.69 | 0.713249 |
Target: 5'- cGGGGCUCgcgCugcGGCUGaCGcUCGCgcgGCu -3' miRNA: 3'- aCCCCGAGaa-Gu--UCGAC-GC-AGCGa--UG- -5' |
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23726 | 5' | -55.7 | NC_005261.1 | + | 121516 | 0.68 | 0.75335 |
Target: 5'- aUGGGGCcgUCgauggCGAGCUccuCGUCGCUGu -3' miRNA: 3'- -ACCCCG--AGaa---GUUCGAc--GCAGCGAUg -5' |
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23726 | 5' | -55.7 | NC_005261.1 | + | 60143 | 0.68 | 0.791663 |
Target: 5'- -cGGGCUCc-CAGGCgcugcagGCGcCGCUGCc -3' miRNA: 3'- acCCCGAGaaGUUCGa------CGCaGCGAUG- -5' |
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23726 | 5' | -55.7 | NC_005261.1 | + | 60426 | 0.68 | 0.791663 |
Target: 5'- cGGGGC-CgcCGcGCUcGCGUCGCUcACg -3' miRNA: 3'- aCCCCGaGaaGUuCGA-CGCAGCGA-UG- -5' |
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23726 | 5' | -55.7 | NC_005261.1 | + | 98101 | 0.67 | 0.844443 |
Target: 5'- gGGGGCgCggCGGGCgGCGagGCUGg -3' miRNA: 3'- aCCCCGaGaaGUUCGaCGCagCGAUg -5' |
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23726 | 5' | -55.7 | NC_005261.1 | + | 84124 | 0.67 | 0.82757 |
Target: 5'- gGGGGCag--CGGGCgGgGUCGCUGg -3' miRNA: 3'- aCCCCGagaaGUUCGaCgCAGCGAUg -5' |
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23726 | 5' | -55.7 | NC_005261.1 | + | 1297 | 0.67 | 0.809954 |
Target: 5'- cGGGGCUCccgUCGccGGCgGCGgcacgCGCUcCg -3' miRNA: 3'- aCCCCGAGa--AGU--UCGaCGCa----GCGAuG- -5' |
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23726 | 5' | -55.7 | NC_005261.1 | + | 24414 | 0.67 | 0.809954 |
Target: 5'- gGGGGCUCggaUCcucGGUUGCGgucCGCgGCg -3' miRNA: 3'- aCCCCGAGa--AGu--UCGACGCa--GCGaUG- -5' |
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23726 | 5' | -55.7 | NC_005261.1 | + | 69961 | 0.66 | 0.85258 |
Target: 5'- aGGGGC-CUcCGGGC-GCG-CGCUAg -3' miRNA: 3'- aCCCCGaGAaGUUCGaCGCaGCGAUg -5' |
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23726 | 5' | -55.7 | NC_005261.1 | + | 53504 | 0.66 | 0.860508 |
Target: 5'- aGGGGCUCguuaUCGcgcccgaaGGCUGUGgcugccgUGUUGCg -3' miRNA: 3'- aCCCCGAGa---AGU--------UCGACGCa------GCGAUG- -5' |
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23726 | 5' | -55.7 | NC_005261.1 | + | 67075 | 0.66 | 0.882973 |
Target: 5'- gGGGGCUCgcUCGGGCgguccaugGCGcgacgCGgUGCg -3' miRNA: 3'- aCCCCGAGa-AGUUCGa-------CGCa----GCgAUG- -5' |
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23726 | 5' | -55.7 | NC_005261.1 | + | 11845 | 0.66 | 0.890002 |
Target: 5'- cGcGGGCgcgCguucgCGAGCgcgaGCGUCaGCUGCg -3' miRNA: 3'- aC-CCCGa--Gaa---GUUCGa---CGCAG-CGAUG- -5' |
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23726 | 5' | -55.7 | NC_005261.1 | + | 56064 | 0.66 | 0.890002 |
Target: 5'- gGGGGCgccCUgggCGAGCaguccGC-UCGCUACu -3' miRNA: 3'- aCCCCGa--GAa--GUUCGa----CGcAGCGAUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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