Results 41 - 60 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23727 | 3' | -54.3 | NC_005261.1 | + | 23602 | 0.67 | 0.928112 |
Target: 5'- gGUGGUGGCU---GUCGCCGcCGcuGCCg -3' miRNA: 3'- gCACUACUGGgguUAGCGGCaGC--UGG- -5' |
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23727 | 3' | -54.3 | NC_005261.1 | + | 126414 | 0.67 | 0.928112 |
Target: 5'- --aGA-GACUUCGcgCGCCGUCG-CCa -3' miRNA: 3'- gcaCUaCUGGGGUuaGCGGCAGCuGG- -5' |
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23727 | 3' | -54.3 | NC_005261.1 | + | 72353 | 0.67 | 0.928112 |
Target: 5'- aCGUG-UGcACCgCCGAcUCGCCccCGACCa -3' miRNA: 3'- -GCACuAC-UGG-GGUU-AGCGGcaGCUGG- -5' |
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23727 | 3' | -54.3 | NC_005261.1 | + | 72816 | 0.67 | 0.933258 |
Target: 5'- -aUGAaGACCUCGAggGCCGcaaggcggUCGGCCa -3' miRNA: 3'- gcACUaCUGGGGUUagCGGC--------AGCUGG- -5' |
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23727 | 3' | -54.3 | NC_005261.1 | + | 52565 | 0.67 | 0.933258 |
Target: 5'- -----cGACUCgcgcgCGAgcUCGCCGUCGACCa -3' miRNA: 3'- gcacuaCUGGG-----GUU--AGCGGCAGCUGG- -5' |
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23727 | 3' | -54.3 | NC_005261.1 | + | 63375 | 0.67 | 0.933258 |
Target: 5'- gCG-GGUGugCCgGGUCGCCc-UGGCCg -3' miRNA: 3'- -GCaCUACugGGgUUAGCGGcaGCUGG- -5' |
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23727 | 3' | -54.3 | NC_005261.1 | + | 45945 | 0.67 | 0.933258 |
Target: 5'- gCGcGAgGGCCgCCAGggCGCCGUUGAgCa -3' miRNA: 3'- -GCaCUaCUGG-GGUUa-GCGGCAGCUgG- -5' |
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23727 | 3' | -54.3 | NC_005261.1 | + | 134548 | 0.67 | 0.936231 |
Target: 5'- aCGUGAccGCCCCuugcugggcggCGCCG-CGGCUg -3' miRNA: 3'- -GCACUacUGGGGuua--------GCGGCaGCUGG- -5' |
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23727 | 3' | -54.3 | NC_005261.1 | + | 113576 | 0.67 | 0.938165 |
Target: 5'- gGUcGGUGGCCgCCg--CGCUGggCGACCu -3' miRNA: 3'- gCA-CUACUGG-GGuuaGCGGCa-GCUGG- -5' |
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23727 | 3' | -54.3 | NC_005261.1 | + | 128856 | 0.67 | 0.938165 |
Target: 5'- --cGGUG-CCCCGccucGUCGCUGcCGACg -3' miRNA: 3'- gcaCUACuGGGGU----UAGCGGCaGCUGg -5' |
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23727 | 3' | -54.3 | NC_005261.1 | + | 5048 | 0.67 | 0.942835 |
Target: 5'- -------cCCCCucGUCGUCGUCGGCCc -3' miRNA: 3'- gcacuacuGGGGu-UAGCGGCAGCUGG- -5' |
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23727 | 3' | -54.3 | NC_005261.1 | + | 54085 | 0.66 | 0.94727 |
Target: 5'- cCGcGcgGACCgCCAcGUUGCCGaUGGCCg -3' miRNA: 3'- -GCaCuaCUGG-GGU-UAGCGGCaGCUGG- -5' |
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23727 | 3' | -54.3 | NC_005261.1 | + | 32142 | 0.66 | 0.94727 |
Target: 5'- cCGcUGggGGCUCgGcgCGCCGcugCGGCCg -3' miRNA: 3'- -GC-ACuaCUGGGgUuaGCGGCa--GCUGG- -5' |
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23727 | 3' | -54.3 | NC_005261.1 | + | 4503 | 0.66 | 0.94727 |
Target: 5'- --cGcgGGCCCCAGUCGCg--CGcCCg -3' miRNA: 3'- gcaCuaCUGGGGUUAGCGgcaGCuGG- -5' |
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23727 | 3' | -54.3 | NC_005261.1 | + | 89291 | 0.66 | 0.951471 |
Target: 5'- --cGgcGGCCgCCAA-CGCCGagGACCu -3' miRNA: 3'- gcaCuaCUGG-GGUUaGCGGCagCUGG- -5' |
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23727 | 3' | -54.3 | NC_005261.1 | + | 20855 | 0.66 | 0.955442 |
Target: 5'- gCGUGgcGGCUCUug-CGCCGcgggcCGGCCa -3' miRNA: 3'- -GCACuaCUGGGGuuaGCGGCa----GCUGG- -5' |
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23727 | 3' | -54.3 | NC_005261.1 | + | 2498 | 0.66 | 0.955442 |
Target: 5'- gCG-GGUGGuCCgCGAgccgCGCCG-CGACCu -3' miRNA: 3'- -GCaCUACU-GGgGUUa---GCGGCaGCUGG- -5' |
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23727 | 3' | -54.3 | NC_005261.1 | + | 121067 | 0.66 | 0.955442 |
Target: 5'- gCGcGGUGugCgCGG-CGCCGgCGGCCg -3' miRNA: 3'- -GCaCUACugGgGUUaGCGGCaGCUGG- -5' |
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23727 | 3' | -54.3 | NC_005261.1 | + | 97359 | 0.66 | 0.955442 |
Target: 5'- cCGUGGggucuacGGCCCgGgcguGUCGCCGcgCGGCUu -3' miRNA: 3'- -GCACUa------CUGGGgU----UAGCGGCa-GCUGG- -5' |
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23727 | 3' | -54.3 | NC_005261.1 | + | 106365 | 0.66 | 0.955442 |
Target: 5'- cCGcGcUGACgCCGccGUCGCCGUUGccGCCg -3' miRNA: 3'- -GCaCuACUGgGGU--UAGCGGCAGC--UGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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