miRNA display CGI


Results 41 - 60 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23727 3' -54.3 NC_005261.1 + 80016 0.69 0.840162
Target:  5'- gGUGGUcACCCgCuuguuggcGUCGCCGUCGccGCCg -3'
miRNA:   3'- gCACUAcUGGG-Gu-------UAGCGGCAGC--UGG- -5'
23727 3' -54.3 NC_005261.1 + 82475 0.69 0.853746
Target:  5'- -----cGGCCCCGuccccguccccgccGUCGUCGUCGGCUc -3'
miRNA:   3'- gcacuaCUGGGGU--------------UAGCGGCAGCUGG- -5'
23727 3' -54.3 NC_005261.1 + 89291 0.66 0.951471
Target:  5'- --cGgcGGCCgCCAA-CGCCGagGACCu -3'
miRNA:   3'- gcaCuaCUGG-GGUUaGCGGCagCUGG- -5'
23727 3' -54.3 NC_005261.1 + 93243 0.66 0.962708
Target:  5'- -----cGGCCgCC-GUCGCCuUCGACCg -3'
miRNA:   3'- gcacuaCUGG-GGuUAGCGGcAGCUGG- -5'
23727 3' -54.3 NC_005261.1 + 95957 0.68 0.90514
Target:  5'- cCGgGAUcGACCCCAGcgCGCCGgCcACCa -3'
miRNA:   3'- -GCaCUA-CUGGGGUUa-GCGGCaGcUGG- -5'
23727 3' -54.3 NC_005261.1 + 97359 0.66 0.955442
Target:  5'- cCGUGGggucuacGGCCCgGgcguGUCGCCGcgCGGCUu -3'
miRNA:   3'- -GCACUa------CUGGGgU----UAGCGGCa-GCUGG- -5'
23727 3' -54.3 NC_005261.1 + 101457 0.7 0.814881
Target:  5'- --cGcUGGCCCCAG-CGCCGcCGGCg -3'
miRNA:   3'- gcaCuACUGGGGUUaGCGGCaGCUGg -5'
23727 3' -54.3 NC_005261.1 + 102229 0.68 0.911239
Target:  5'- -----cGGCCUCGAUggcCGCCGUCGcCCg -3'
miRNA:   3'- gcacuaCUGGGGUUA---GCGGCAGCuGG- -5'
23727 3' -54.3 NC_005261.1 + 105956 0.69 0.848221
Target:  5'- cCGUcGAUGGCCUCGG-CGCCcagcgcggcGUCGACg -3'
miRNA:   3'- -GCA-CUACUGGGGUUaGCGG---------CAGCUGg -5'
23727 3' -54.3 NC_005261.1 + 106079 0.69 0.863744
Target:  5'- -uUGcgGaACCCCAcagcggcgAUCGCgaCGUCGGCCg -3'
miRNA:   3'- gcACuaC-UGGGGU--------UAGCG--GCAGCUGG- -5'
23727 3' -54.3 NC_005261.1 + 106278 0.73 0.660649
Target:  5'- cCG-GgcGGCCCgugCAAaCGCCGUCGACCu -3'
miRNA:   3'- -GCaCuaCUGGG---GUUaGCGGCAGCUGG- -5'
23727 3' -54.3 NC_005261.1 + 106326 0.68 0.898807
Target:  5'- uCGUGAgccacGGCCCCGc-CGCCG-CGuCCg -3'
miRNA:   3'- -GCACUa----CUGGGGUuaGCGGCaGCuGG- -5'
23727 3' -54.3 NC_005261.1 + 106365 0.66 0.955442
Target:  5'- cCGcGcUGACgCCGccGUCGCCGUUGccGCCg -3'
miRNA:   3'- -GCaCuACUGgGGU--UAGCGGCAGC--UGG- -5'
23727 3' -54.3 NC_005261.1 + 111205 0.68 0.90514
Target:  5'- aGUGG-GGCCgCCAcgcccuucgaGUCGCCGUuaaauauccccgCGGCCg -3'
miRNA:   3'- gCACUaCUGG-GGU----------UAGCGGCA------------GCUGG- -5'
23727 3' -54.3 NC_005261.1 + 111784 0.66 0.959186
Target:  5'- cCGgGGUGuGCCCCuggaCGCCuggcucgcGUCGGCCg -3'
miRNA:   3'- -GCaCUAC-UGGGGuua-GCGG--------CAGCUGG- -5'
23727 3' -54.3 NC_005261.1 + 113576 0.67 0.938165
Target:  5'- gGUcGGUGGCCgCCg--CGCUGggCGACCu -3'
miRNA:   3'- gCA-CUACUGG-GGuuaGCGGCa-GCUGG- -5'
23727 3' -54.3 NC_005261.1 + 118497 0.69 0.871195
Target:  5'- gCGcUGcgGACCCUGG-CGCCGcUCGGCg -3'
miRNA:   3'- -GC-ACuaCUGGGGUUaGCGGC-AGCUGg -5'
23727 3' -54.3 NC_005261.1 + 119524 0.69 0.848221
Target:  5'- -----cGGCCCCGGUCcCCG-CGGCCg -3'
miRNA:   3'- gcacuaCUGGGGUUAGcGGCaGCUGG- -5'
23727 3' -54.3 NC_005261.1 + 121067 0.66 0.955442
Target:  5'- gCGcGGUGugCgCGG-CGCCGgCGGCCg -3'
miRNA:   3'- -GCaCUACugGgGUUaGCGGCaGCUGG- -5'
23727 3' -54.3 NC_005261.1 + 121522 0.68 0.892242
Target:  5'- cCGUcGAUGGCgagcuCCUcGUCGCUGUCGgaGCCg -3'
miRNA:   3'- -GCA-CUACUG-----GGGuUAGCGGCAGC--UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.