Results 61 - 68 of 68 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 23727 | 3' | -54.3 | NC_005261.1 | + | 123182 | 0.69 | 0.847424 |
|
Target: 5'- gCGUGGUGGCuggugugggcggaCCCAGcCGCCGcguaagcgCGGCCu -3' miRNA: 3'- -GCACUACUG-------------GGGUUaGCGGCa-------GCUGG- -5' |
|||||||
| 23727 | 3' | -54.3 | NC_005261.1 | + | 126414 | 0.67 | 0.928112 |
|
Target: 5'- --aGA-GACUUCGcgCGCCGUCG-CCa -3' miRNA: 3'- gcaCUaCUGGGGUuaGCGGCAGCuGG- -5' |
|||||||
| 23727 | 3' | -54.3 | NC_005261.1 | + | 127961 | 0.71 | 0.769543 |
|
Target: 5'- aCGUGGUcgUCCgAAUCGUCGUCGuaGCCg -3' miRNA: 3'- -GCACUAcuGGGgUUAGCGGCAGC--UGG- -5' |
|||||||
| 23727 | 3' | -54.3 | NC_005261.1 | + | 128856 | 0.67 | 0.938165 |
|
Target: 5'- --cGGUG-CCCCGccucGUCGCUGcCGACg -3' miRNA: 3'- gcaCUACuGGGGU----UAGCGGCaGCUGg -5' |
|||||||
| 23727 | 3' | -54.3 | NC_005261.1 | + | 130803 | 0.66 | 0.962708 |
|
Target: 5'- gCG-GAcGACgCCCAAUaCGUCGagGGCCa -3' miRNA: 3'- -GCaCUaCUG-GGGUUA-GCGGCagCUGG- -5' |
|||||||
| 23727 | 3' | -54.3 | NC_005261.1 | + | 132941 | 0.69 | 0.863744 |
|
Target: 5'- aCGUGGU--CCCCGAgcgcugCGCCGacgUGGCCg -3' miRNA: 3'- -GCACUAcuGGGGUUa-----GCGGCa--GCUGG- -5' |
|||||||
| 23727 | 3' | -54.3 | NC_005261.1 | + | 133711 | 0.66 | 0.959186 |
|
Target: 5'- -----cGACCCCGG-CGCCGUCuACg -3' miRNA: 3'- gcacuaCUGGGGUUaGCGGCAGcUGg -5' |
|||||||
| 23727 | 3' | -54.3 | NC_005261.1 | + | 134548 | 0.67 | 0.936231 |
|
Target: 5'- aCGUGAccGCCCCuugcugggcggCGCCG-CGGCUg -3' miRNA: 3'- -GCACUacUGGGGuua--------GCGGCaGCUGG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home