Results 41 - 60 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23727 | 3' | -54.3 | NC_005261.1 | + | 63804 | 0.71 | 0.760072 |
Target: 5'- gCGUGAgcgUGAaCCCGA-CGCCGcCGACUg -3' miRNA: 3'- -GCACU---ACUgGGGUUaGCGGCaGCUGG- -5' |
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23727 | 3' | -54.3 | NC_005261.1 | + | 16208 | 0.71 | 0.760072 |
Target: 5'- gCGUGAUGGCCUCGAg-GC--UCGGCCa -3' miRNA: 3'- -GCACUACUGGGGUUagCGgcAGCUGG- -5' |
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23727 | 3' | -54.3 | NC_005261.1 | + | 39772 | 0.72 | 0.731016 |
Target: 5'- --gGAUGGCCUCGaggacGUCGCCGgggggcggcgCGGCCg -3' miRNA: 3'- gcaCUACUGGGGU-----UAGCGGCa---------GCUGG- -5' |
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23727 | 3' | -54.3 | NC_005261.1 | + | 106278 | 0.73 | 0.660649 |
Target: 5'- cCG-GgcGGCCCgugCAAaCGCCGUCGACCu -3' miRNA: 3'- -GCaCuaCUGGG---GUUaGCGGCAGCUGG- -5' |
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23727 | 3' | -54.3 | NC_005261.1 | + | 39737 | 0.74 | 0.578972 |
Target: 5'- gCG-GGUG-CCCCAGUCGCgGaucUCGGCCu -3' miRNA: 3'- -GCaCUACuGGGGUUAGCGgC---AGCUGG- -5' |
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23727 | 3' | -54.3 | NC_005261.1 | + | 75864 | 0.69 | 0.848221 |
Target: 5'- --cGgcGGCCCCGAcggCGCCGUgGGCg -3' miRNA: 3'- gcaCuaCUGGGGUUa--GCGGCAgCUGg -5' |
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23727 | 3' | -54.3 | NC_005261.1 | + | 119524 | 0.69 | 0.848221 |
Target: 5'- -----cGGCCCCGGUCcCCG-CGGCCg -3' miRNA: 3'- gcacuaCUGGGGUUAGcGGCaGCUGG- -5' |
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23727 | 3' | -54.3 | NC_005261.1 | + | 37621 | 0.68 | 0.892242 |
Target: 5'- gGUGAUGGCCUCua-CGCCuagCGGCg -3' miRNA: 3'- gCACUACUGGGGuuaGCGGca-GCUGg -5' |
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23727 | 3' | -54.3 | NC_005261.1 | + | 10517 | 0.68 | 0.892242 |
Target: 5'- cCGcUGcgGGCCCCGcggcgcgcUCGCUGUCGcCCc -3' miRNA: 3'- -GC-ACuaCUGGGGUu-------AGCGGCAGCuGG- -5' |
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23727 | 3' | -54.3 | NC_005261.1 | + | 15237 | 0.68 | 0.885449 |
Target: 5'- gCGuUGA-GGCCCCGcUCGCaGUgGGCCg -3' miRNA: 3'- -GC-ACUaCUGGGGUuAGCGgCAgCUGG- -5' |
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23727 | 3' | -54.3 | NC_005261.1 | + | 71356 | 0.68 | 0.883367 |
Target: 5'- gGUGAgcgccgagagcgcgaGCCCCAGccgCGCCG-CGACCc -3' miRNA: 3'- gCACUac-------------UGGGGUUa--GCGGCaGCUGG- -5' |
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23727 | 3' | -54.3 | NC_005261.1 | + | 76672 | 0.69 | 0.871195 |
Target: 5'- cCGUGcUGGCCC---UCGCCGaCGACg -3' miRNA: 3'- -GCACuACUGGGguuAGCGGCaGCUGg -5' |
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23727 | 3' | -54.3 | NC_005261.1 | + | 118497 | 0.69 | 0.871195 |
Target: 5'- gCGcUGcgGACCCUGG-CGCCGcUCGGCg -3' miRNA: 3'- -GC-ACuaCUGGGGUUaGCGGC-AGCUGg -5' |
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23727 | 3' | -54.3 | NC_005261.1 | + | 40027 | 0.69 | 0.871195 |
Target: 5'- -----gGGCCCgCAGUCGaCCG-CGACCa -3' miRNA: 3'- gcacuaCUGGG-GUUAGC-GGCaGCUGG- -5' |
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23727 | 3' | -54.3 | NC_005261.1 | + | 15574 | 0.69 | 0.868982 |
Target: 5'- aCGcGGUcGCCUguagcaugacgaagCAGUCGCCGUCGACg -3' miRNA: 3'- -GCaCUAcUGGG--------------GUUAGCGGCAGCUGg -5' |
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23727 | 3' | -54.3 | NC_005261.1 | + | 132941 | 0.69 | 0.863744 |
Target: 5'- aCGUGGU--CCCCGAgcgcugCGCCGacgUGGCCg -3' miRNA: 3'- -GCACUAcuGGGGUUa-----GCGGCa--GCUGG- -5' |
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23727 | 3' | -54.3 | NC_005261.1 | + | 106079 | 0.69 | 0.863744 |
Target: 5'- -uUGcgGaACCCCAcagcggcgAUCGCgaCGUCGGCCg -3' miRNA: 3'- gcACuaC-UGGGGU--------UAGCG--GCAGCUGG- -5' |
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23727 | 3' | -54.3 | NC_005261.1 | + | 79319 | 0.69 | 0.856084 |
Target: 5'- -aUGAUGGCCau-GUUGCCGUCcgucuuGACCa -3' miRNA: 3'- gcACUACUGGgguUAGCGGCAG------CUGG- -5' |
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23727 | 3' | -54.3 | NC_005261.1 | + | 82475 | 0.69 | 0.853746 |
Target: 5'- -----cGGCCCCGuccccguccccgccGUCGUCGUCGGCUc -3' miRNA: 3'- gcacuaCUGGGGU--------------UAGCGGCAGCUGG- -5' |
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23727 | 3' | -54.3 | NC_005261.1 | + | 16384 | 0.69 | 0.848221 |
Target: 5'- cCGUG--GGCCUCGccGUCGUCGUCG-CCg -3' miRNA: 3'- -GCACuaCUGGGGU--UAGCGGCAGCuGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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