miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23727 3' -54.3 NC_005261.1 + 134548 0.67 0.936231
Target:  5'- aCGUGAccGCCCCuugcugggcggCGCCG-CGGCUg -3'
miRNA:   3'- -GCACUacUGGGGuua--------GCGGCaGCUGG- -5'
23727 3' -54.3 NC_005261.1 + 72816 0.67 0.933258
Target:  5'- -aUGAaGACCUCGAggGCCGcaaggcggUCGGCCa -3'
miRNA:   3'- gcACUaCUGGGGUUagCGGC--------AGCUGG- -5'
23727 3' -54.3 NC_005261.1 + 52565 0.67 0.933258
Target:  5'- -----cGACUCgcgcgCGAgcUCGCCGUCGACCa -3'
miRNA:   3'- gcacuaCUGGG-----GUU--AGCGGCAGCUGG- -5'
23727 3' -54.3 NC_005261.1 + 63375 0.67 0.933258
Target:  5'- gCG-GGUGugCCgGGUCGCCc-UGGCCg -3'
miRNA:   3'- -GCaCUACugGGgUUAGCGGcaGCUGG- -5'
23727 3' -54.3 NC_005261.1 + 45945 0.67 0.933258
Target:  5'- gCGcGAgGGCCgCCAGggCGCCGUUGAgCa -3'
miRNA:   3'- -GCaCUaCUGG-GGUUa-GCGGCAGCUgG- -5'
23727 3' -54.3 NC_005261.1 + 126414 0.67 0.928112
Target:  5'- --aGA-GACUUCGcgCGCCGUCG-CCa -3'
miRNA:   3'- gcaCUaCUGGGGUuaGCGGCAGCuGG- -5'
23727 3' -54.3 NC_005261.1 + 72353 0.67 0.928112
Target:  5'- aCGUG-UGcACCgCCGAcUCGCCccCGACCa -3'
miRNA:   3'- -GCACuAC-UGG-GGUU-AGCGGcaGCUGG- -5'
23727 3' -54.3 NC_005261.1 + 23602 0.67 0.928112
Target:  5'- gGUGGUGGCU---GUCGCCGcCGcuGCCg -3'
miRNA:   3'- gCACUACUGGgguUAGCGGCaGC--UGG- -5'
23727 3' -54.3 NC_005261.1 + 47238 0.67 0.917102
Target:  5'- -cUGG-GGCCCCAGaaaGCCGagGACCu -3'
miRNA:   3'- gcACUaCUGGGGUUag-CGGCagCUGG- -5'
23727 3' -54.3 NC_005261.1 + 102229 0.68 0.911239
Target:  5'- -----cGGCCUCGAUggcCGCCGUCGcCCg -3'
miRNA:   3'- gcacuaCUGGGGUUA---GCGGCAGCuGG- -5'
23727 3' -54.3 NC_005261.1 + 95957 0.68 0.90514
Target:  5'- cCGgGAUcGACCCCAGcgCGCCGgCcACCa -3'
miRNA:   3'- -GCaCUA-CUGGGGUUa-GCGGCaGcUGG- -5'
23727 3' -54.3 NC_005261.1 + 111205 0.68 0.90514
Target:  5'- aGUGG-GGCCgCCAcgcccuucgaGUCGCCGUuaaauauccccgCGGCCg -3'
miRNA:   3'- gCACUaCUGG-GGU----------UAGCGGCA------------GCUGG- -5'
23727 3' -54.3 NC_005261.1 + 51259 0.68 0.90514
Target:  5'- cCGUGcUGcugcuguCCCacaaGAUCGCCGUCcuGGCCg -3'
miRNA:   3'- -GCACuACu------GGGg---UUAGCGGCAG--CUGG- -5'
23727 3' -54.3 NC_005261.1 + 1211 0.68 0.90514
Target:  5'- --cGcgGACCCCccgccGAUgcCGCCGUCG-CCg -3'
miRNA:   3'- gcaCuaCUGGGG-----UUA--GCGGCAGCuGG- -5'
23727 3' -54.3 NC_005261.1 + 106326 0.68 0.898807
Target:  5'- uCGUGAgccacGGCCCCGc-CGCCG-CGuCCg -3'
miRNA:   3'- -GCACUa----CUGGGGUuaGCGGCaGCuGG- -5'
23727 3' -54.3 NC_005261.1 + 77632 0.68 0.898807
Target:  5'- ---cAUGGCCCUGgccggcgccAUCGCCGaCGGCCg -3'
miRNA:   3'- gcacUACUGGGGU---------UAGCGGCaGCUGG- -5'
23727 3' -54.3 NC_005261.1 + 36377 0.68 0.898807
Target:  5'- -cUGGcacgGGCCCCAGUCuGCCGgcccUGGCCc -3'
miRNA:   3'- gcACUa---CUGGGGUUAG-CGGCa---GCUGG- -5'
23727 3' -54.3 NC_005261.1 + 12129 0.68 0.898807
Target:  5'- --gGAUGGCgCCCGc-CGCCGcggCGGCCg -3'
miRNA:   3'- gcaCUACUG-GGGUuaGCGGCa--GCUGG- -5'
23727 3' -54.3 NC_005261.1 + 121522 0.68 0.892242
Target:  5'- cCGUcGAUGGCgagcuCCUcGUCGCUGUCGgaGCCg -3'
miRNA:   3'- -GCA-CUACUG-----GGGuUAGCGGCAGC--UGG- -5'
23727 3' -54.3 NC_005261.1 + 37621 0.68 0.892242
Target:  5'- gGUGAUGGCCUCua-CGCCuagCGGCg -3'
miRNA:   3'- gCACUACUGGGGuuaGCGGca-GCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.