miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23727 5' -55.1 NC_005261.1 + 63088 0.66 0.895732
Target:  5'- -cGG-GUACGC-CUCCUGGAagaGCGCg- -3'
miRNA:   3'- caCUaCAUGUGcGAGGACCU---CGCGaa -5'
23727 5' -55.1 NC_005261.1 + 125018 0.66 0.888836
Target:  5'- ----cGUGCGCuccagcagGCUCCggUGGGGCGCUg -3'
miRNA:   3'- cacuaCAUGUG--------CGAGG--ACCUCGCGAa -5'
23727 5' -55.1 NC_005261.1 + 117946 0.66 0.881699
Target:  5'- ----cGUGCGCGCUCgCUGcuacGGGCGCg- -3'
miRNA:   3'- cacuaCAUGUGCGAG-GAC----CUCGCGaa -5'
23727 5' -55.1 NC_005261.1 + 41926 0.67 0.850843
Target:  5'- gGUGAgg-ACAUuCUCgCUGGAGCGCa- -3'
miRNA:   3'- -CACUacaUGUGcGAG-GACCUCGCGaa -5'
23727 5' -55.1 NC_005261.1 + 31967 0.68 0.816612
Target:  5'- -cGGUGgcCACGCgCCUGGGcccGCGCa- -3'
miRNA:   3'- caCUACauGUGCGaGGACCU---CGCGaa -5'
23727 5' -55.1 NC_005261.1 + 75649 0.68 0.789035
Target:  5'- -cGcgGccgGCGCGUUCCUGGcGCGCg- -3'
miRNA:   3'- caCuaCa--UGUGCGAGGACCuCGCGaa -5'
23727 5' -55.1 NC_005261.1 + 38460 0.68 0.789035
Target:  5'- -cGAggccaACGCGUUCCUGGAGCaGCa- -3'
miRNA:   3'- caCUaca--UGUGCGAGGACCUCG-CGaa -5'
23727 5' -55.1 NC_005261.1 + 45344 0.68 0.789035
Target:  5'- ----cGUGCAgaUGUUCCUGGAGgGCUg -3'
miRNA:   3'- cacuaCAUGU--GCGAGGACCUCgCGAa -5'
23727 5' -55.1 NC_005261.1 + 83660 0.69 0.760102
Target:  5'- cGUGAggcggACGCGCgCCUGGGcGCGCa- -3'
miRNA:   3'- -CACUaca--UGUGCGaGGACCU-CGCGaa -5'
23727 5' -55.1 NC_005261.1 + 68480 0.69 0.750202
Target:  5'- --cGUGUACGCGCccaaCCgGGAGUGCUUc -3'
miRNA:   3'- cacUACAUGUGCGa---GGaCCUCGCGAA- -5'
23727 5' -55.1 NC_005261.1 + 110669 0.69 0.71988
Target:  5'- --cGUGUACGCGCagcgCCUGGAGCacgaggGCUUc -3'
miRNA:   3'- cacUACAUGUGCGa---GGACCUCG------CGAA- -5'
23727 5' -55.1 NC_005261.1 + 29497 0.7 0.679422
Target:  5'- cUGGUGUACGCGCgccgcgacgccauggCCUGGcugcagAGCGCg- -3'
miRNA:   3'- cACUACAUGUGCGa--------------GGACC------UCGCGaa -5'
23727 5' -55.1 NC_005261.1 + 21737 0.7 0.657338
Target:  5'- -cGAUcgACACGCggcugcugcgCCUGGAGCGCg- -3'
miRNA:   3'- caCUAcaUGUGCGa---------GGACCUCGCGaa -5'
23727 5' -55.1 NC_005261.1 + 38329 0.72 0.541944
Target:  5'- aUGGUGUuCAUGCU-CUGGGGCGCg- -3'
miRNA:   3'- cACUACAuGUGCGAgGACCUCGCGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.