Results 1 - 14 of 14 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23727 | 5' | -55.1 | NC_005261.1 | + | 63088 | 0.66 | 0.895732 |
Target: 5'- -cGG-GUACGC-CUCCUGGAagaGCGCg- -3' miRNA: 3'- caCUaCAUGUGcGAGGACCU---CGCGaa -5' |
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23727 | 5' | -55.1 | NC_005261.1 | + | 125018 | 0.66 | 0.888836 |
Target: 5'- ----cGUGCGCuccagcagGCUCCggUGGGGCGCUg -3' miRNA: 3'- cacuaCAUGUG--------CGAGG--ACCUCGCGAa -5' |
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23727 | 5' | -55.1 | NC_005261.1 | + | 117946 | 0.66 | 0.881699 |
Target: 5'- ----cGUGCGCGCUCgCUGcuacGGGCGCg- -3' miRNA: 3'- cacuaCAUGUGCGAG-GAC----CUCGCGaa -5' |
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23727 | 5' | -55.1 | NC_005261.1 | + | 41926 | 0.67 | 0.850843 |
Target: 5'- gGUGAgg-ACAUuCUCgCUGGAGCGCa- -3' miRNA: 3'- -CACUacaUGUGcGAG-GACCUCGCGaa -5' |
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23727 | 5' | -55.1 | NC_005261.1 | + | 31967 | 0.68 | 0.816612 |
Target: 5'- -cGGUGgcCACGCgCCUGGGcccGCGCa- -3' miRNA: 3'- caCUACauGUGCGaGGACCU---CGCGaa -5' |
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23727 | 5' | -55.1 | NC_005261.1 | + | 45344 | 0.68 | 0.789035 |
Target: 5'- ----cGUGCAgaUGUUCCUGGAGgGCUg -3' miRNA: 3'- cacuaCAUGU--GCGAGGACCUCgCGAa -5' |
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23727 | 5' | -55.1 | NC_005261.1 | + | 38460 | 0.68 | 0.789035 |
Target: 5'- -cGAggccaACGCGUUCCUGGAGCaGCa- -3' miRNA: 3'- caCUaca--UGUGCGAGGACCUCG-CGaa -5' |
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23727 | 5' | -55.1 | NC_005261.1 | + | 75649 | 0.68 | 0.789035 |
Target: 5'- -cGcgGccgGCGCGUUCCUGGcGCGCg- -3' miRNA: 3'- caCuaCa--UGUGCGAGGACCuCGCGaa -5' |
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23727 | 5' | -55.1 | NC_005261.1 | + | 83660 | 0.69 | 0.760102 |
Target: 5'- cGUGAggcggACGCGCgCCUGGGcGCGCa- -3' miRNA: 3'- -CACUaca--UGUGCGaGGACCU-CGCGaa -5' |
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23727 | 5' | -55.1 | NC_005261.1 | + | 68480 | 0.69 | 0.750202 |
Target: 5'- --cGUGUACGCGCccaaCCgGGAGUGCUUc -3' miRNA: 3'- cacUACAUGUGCGa---GGaCCUCGCGAA- -5' |
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23727 | 5' | -55.1 | NC_005261.1 | + | 110669 | 0.69 | 0.71988 |
Target: 5'- --cGUGUACGCGCagcgCCUGGAGCacgaggGCUUc -3' miRNA: 3'- cacUACAUGUGCGa---GGACCUCG------CGAA- -5' |
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23727 | 5' | -55.1 | NC_005261.1 | + | 29497 | 0.7 | 0.679422 |
Target: 5'- cUGGUGUACGCGCgccgcgacgccauggCCUGGcugcagAGCGCg- -3' miRNA: 3'- cACUACAUGUGCGa--------------GGACC------UCGCGaa -5' |
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23727 | 5' | -55.1 | NC_005261.1 | + | 21737 | 0.7 | 0.657338 |
Target: 5'- -cGAUcgACACGCggcugcugcgCCUGGAGCGCg- -3' miRNA: 3'- caCUAcaUGUGCGa---------GGACCUCGCGaa -5' |
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23727 | 5' | -55.1 | NC_005261.1 | + | 38329 | 0.72 | 0.541944 |
Target: 5'- aUGGUGUuCAUGCU-CUGGGGCGCg- -3' miRNA: 3'- cACUACAuGUGCGAgGACCUCGCGaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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