miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23728 3' -58.4 NC_005261.1 + 129697 0.66 0.842859
Target:  5'- gGCCGGGGCcGGGGCCGGaGGCa---- -3'
miRNA:   3'- -CGGCUCUGcCUCCGGCUgCUGcacac -5'
23728 3' -58.4 NC_005261.1 + 128127 0.66 0.842859
Target:  5'- gGCCGAGuGCGGAGagaGGCGACG-GUc -3'
miRNA:   3'- -CGGCUC-UGCCUCcggCUGCUGCaCAc -5'
23728 3' -58.4 NC_005261.1 + 30188 0.66 0.834883
Target:  5'- cGCCGAGGCggccgccgcgcuGGAGGCggccgcgcUGGCGGCGcgaaccGUGg -3'
miRNA:   3'- -CGGCUCUG------------CCUCCG--------GCUGCUGCa-----CAC- -5'
23728 3' -58.4 NC_005261.1 + 22687 0.66 0.834883
Target:  5'- cGCCGggGGACGG-GcCCGGCGACGa--- -3'
miRNA:   3'- -CGGC--UCUGCCuCcGGCUGCUGCacac -5'
23728 3' -58.4 NC_005261.1 + 134211 0.66 0.834883
Target:  5'- cGCgCGGGucGCGGcGGCCGGCagcgucGGCGUGg- -3'
miRNA:   3'- -CG-GCUC--UGCCuCCGGCUG------CUGCACac -5'
23728 3' -58.4 NC_005261.1 + 84876 0.66 0.826732
Target:  5'- aCCGAGcgcacgaGGuGGCUGGCGGCGaagGUGc -3'
miRNA:   3'- cGGCUCug-----CCuCCGGCUGCUGCa--CAC- -5'
23728 3' -58.4 NC_005261.1 + 73913 0.66 0.826732
Target:  5'- uGCaGAGcCGGcGGcCCGACuGCGUGUGc -3'
miRNA:   3'- -CGgCUCuGCCuCC-GGCUGcUGCACAC- -5'
23728 3' -58.4 NC_005261.1 + 5853 0.66 0.826732
Target:  5'- gGCCGAGAgaGGGGUcuCGACGACGg--- -3'
miRNA:   3'- -CGGCUCUgcCUCCG--GCUGCUGCacac -5'
23728 3' -58.4 NC_005261.1 + 28576 0.66 0.821761
Target:  5'- gGCCGAGGCGcgcGAGcGCCGGCGggccgcccGCGccgagcuggcggagcUGUGg -3'
miRNA:   3'- -CGGCUCUGC---CUC-CGGCUGC--------UGC---------------ACAC- -5'
23728 3' -58.4 NC_005261.1 + 93949 0.66 0.818414
Target:  5'- cGCCGccuccGGGCGGucGGCCGuCGACGc--- -3'
miRNA:   3'- -CGGC-----UCUGCCu-CCGGCuGCUGCacac -5'
23728 3' -58.4 NC_005261.1 + 2835 0.66 0.809934
Target:  5'- aGCUcGGGCGGcaGGGCCGGCGGCc---- -3'
miRNA:   3'- -CGGcUCUGCC--UCCGGCUGCUGcacac -5'
23728 3' -58.4 NC_005261.1 + 132094 0.66 0.809934
Target:  5'- uGCCGcGGAgGGcGGCCG-CGACGcgcucGUGg -3'
miRNA:   3'- -CGGC-UCUgCCuCCGGCuGCUGCa----CAC- -5'
23728 3' -58.4 NC_005261.1 + 88543 0.66 0.809934
Target:  5'- cGUgGAGACGaccgaguacccGAGcGCCGGCGACGcGUc -3'
miRNA:   3'- -CGgCUCUGC-----------CUC-CGGCUGCUGCaCAc -5'
23728 3' -58.4 NC_005261.1 + 135205 0.66 0.809934
Target:  5'- gGCCGAGGCGGcgcagaGGGCC-ACGGCc---- -3'
miRNA:   3'- -CGGCUCUGCC------UCCGGcUGCUGcacac -5'
23728 3' -58.4 NC_005261.1 + 96840 0.66 0.809934
Target:  5'- uGUCGAGGCcGGGGUCGACGGgGg--- -3'
miRNA:   3'- -CGGCUCUGcCUCCGGCUGCUgCacac -5'
23728 3' -58.4 NC_005261.1 + 77765 0.66 0.809934
Target:  5'- aGCCGGGGCGGcgGGGaCGACGAgGc--- -3'
miRNA:   3'- -CGGCUCUGCC--UCCgGCUGCUgCacac -5'
23728 3' -58.4 NC_005261.1 + 36568 0.66 0.809934
Target:  5'- aGCCGAGcugaGCGGGGGCCcGCcGCGg--- -3'
miRNA:   3'- -CGGCUC----UGCCUCCGGcUGcUGCacac -5'
23728 3' -58.4 NC_005261.1 + 23623 0.66 0.809934
Target:  5'- uGCCGGGgcgcgGCGGGGGUCGgGCGGC-UGg- -3'
miRNA:   3'- -CGGCUC-----UGCCUCCGGC-UGCUGcACac -5'
23728 3' -58.4 NC_005261.1 + 74337 0.66 0.801301
Target:  5'- aCCGAGACcGcAGGCgCGGCGGCGg--- -3'
miRNA:   3'- cGGCUCUGcC-UCCG-GCUGCUGCacac -5'
23728 3' -58.4 NC_005261.1 + 118783 0.66 0.801301
Target:  5'- cGCUGcAGACGGcGcGCUGAUGGCGcacGUGg -3'
miRNA:   3'- -CGGC-UCUGCCuC-CGGCUGCUGCa--CAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.