miRNA display CGI


Results 1 - 20 of 265 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23728 5' -56 NC_005261.1 + 10978 0.66 0.908256
Target:  5'- cCCGC-CccGCGCCcgacUGGCGCugGUCc -3'
miRNA:   3'- aGGUGuGcuUGUGGc---ACCGCGugCAG- -5'
23728 5' -56 NC_005261.1 + 34021 0.66 0.908256
Target:  5'- cUCgACGUGAuCACCGgcgcGGCGCGCG-Cg -3'
miRNA:   3'- -AGgUGUGCUuGUGGCa---CCGCGUGCaG- -5'
23728 5' -56 NC_005261.1 + 89011 0.66 0.908256
Target:  5'- aCCAagUACGAggGCGCCGUGGaCGUgACGa- -3'
miRNA:   3'- aGGU--GUGCU--UGUGGCACC-GCG-UGCag -5'
23728 5' -56 NC_005261.1 + 21643 0.66 0.908256
Target:  5'- cCgGCGCGGACGCCGcUGcCGCACc-- -3'
miRNA:   3'- aGgUGUGCUUGUGGC-ACcGCGUGcag -5'
23728 5' -56 NC_005261.1 + 70923 0.66 0.908256
Target:  5'- cCCGCGCGAGCuCCagcGCcuGCGCGUCc -3'
miRNA:   3'- aGGUGUGCUUGuGGcacCG--CGUGCAG- -5'
23728 5' -56 NC_005261.1 + 33835 0.66 0.908256
Target:  5'- --gGCGCGGGCcCCcUGGCGCugGg- -3'
miRNA:   3'- aggUGUGCUUGuGGcACCGCGugCag -5'
23728 5' -56 NC_005261.1 + 137801 0.66 0.908256
Target:  5'- cCCGCGCcGGCGCCGccccUGGUGCucGCGg- -3'
miRNA:   3'- aGGUGUGcUUGUGGC----ACCGCG--UGCag -5'
23728 5' -56 NC_005261.1 + 118 0.66 0.908256
Target:  5'- cCCGCGCcGGCGCCGccccUGGUGCucGCGg- -3'
miRNA:   3'- aGGUGUGcUUGUGGC----ACCGCG--UGCag -5'
23728 5' -56 NC_005261.1 + 19421 0.66 0.908256
Target:  5'- gCCGCGcCGAAguCGCCcaGGCaCACGUCg -3'
miRNA:   3'- aGGUGU-GCUU--GUGGcaCCGcGUGCAG- -5'
23728 5' -56 NC_005261.1 + 90070 0.66 0.908256
Target:  5'- gCCcCGCGGGCGCCGagGGCaGCgACGg- -3'
miRNA:   3'- aGGuGUGCUUGUGGCa-CCG-CG-UGCag -5'
23728 5' -56 NC_005261.1 + 76070 0.66 0.908256
Target:  5'- gCCACcaggGCGGGCugCugcgccucGUGGCGCugGa- -3'
miRNA:   3'- aGGUG----UGCUUGugG--------CACCGCGugCag -5'
23728 5' -56 NC_005261.1 + 21135 0.66 0.908256
Target:  5'- cCCcCACGAGCG-CGUGGUgauuaGCACGg- -3'
miRNA:   3'- aGGuGUGCUUGUgGCACCG-----CGUGCag -5'
23728 5' -56 NC_005261.1 + 131746 0.66 0.908256
Target:  5'- -gCACGCGGacggcACGCCGgccGGCGCGgCGg- -3'
miRNA:   3'- agGUGUGCU-----UGUGGCa--CCGCGU-GCag -5'
23728 5' -56 NC_005261.1 + 80583 0.66 0.908256
Target:  5'- cUCCuugagGCGCcGGC-CCGUGGC-CAUGUCg -3'
miRNA:   3'- -AGG-----UGUGcUUGuGGCACCGcGUGCAG- -5'
23728 5' -56 NC_005261.1 + 63351 0.66 0.902027
Target:  5'- cCCACGgGuuCACgGUGGCGCgguGCGg- -3'
miRNA:   3'- aGGUGUgCuuGUGgCACCGCG---UGCag -5'
23728 5' -56 NC_005261.1 + 16119 0.66 0.902027
Target:  5'- -gCACGCGAuCACCGcGGC-CGCGa- -3'
miRNA:   3'- agGUGUGCUuGUGGCaCCGcGUGCag -5'
23728 5' -56 NC_005261.1 + 63823 0.66 0.902027
Target:  5'- gCCGC-CGAcuGCcUCGUGGCGCGCc-- -3'
miRNA:   3'- aGGUGuGCU--UGuGGCACCGCGUGcag -5'
23728 5' -56 NC_005261.1 + 3561 0.66 0.902027
Target:  5'- --gGCGCG-GCGCCGcuaaGGCGCGCG-Cg -3'
miRNA:   3'- aggUGUGCuUGUGGCa---CCGCGUGCaG- -5'
23728 5' -56 NC_005261.1 + 116041 0.66 0.902027
Target:  5'- gUCUGCgccACGAugGCCuUGGCGCcccGCGUg -3'
miRNA:   3'- -AGGUG---UGCUugUGGcACCGCG---UGCAg -5'
23728 5' -56 NC_005261.1 + 73465 0.66 0.902027
Target:  5'- gUCCGCGCGcccccccuGgGCCGcggcgcGGCGCGCGg- -3'
miRNA:   3'- -AGGUGUGCu-------UgUGGCa-----CCGCGUGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.