miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23729 3' -55.9 NC_005261.1 + 1782 0.66 0.873138
Target:  5'- -uGGCGCcgcggcagagccGCAGCGgcgGCGCcccGggGUAg -3'
miRNA:   3'- cuCCGCG------------UGUCGCa--CGCGua-CuuCAU- -5'
23729 3' -55.9 NC_005261.1 + 56605 0.66 0.873138
Target:  5'- --cGCGCGCcaAGCGcgcGCGCGUGGAGc- -3'
miRNA:   3'- cucCGCGUG--UCGCa--CGCGUACUUCau -5'
23729 3' -55.9 NC_005261.1 + 74755 0.66 0.873138
Target:  5'- -uGGCGCgGCAGCGcgccacagGCGCG-GAGGUc -3'
miRNA:   3'- cuCCGCG-UGUCGCa-------CGCGUaCUUCAu -5'
23729 3' -55.9 NC_005261.1 + 3544 0.66 0.865525
Target:  5'- -cGGCGCGCAGCGcggcggGCGCGg------ -3'
miRNA:   3'- cuCCGCGUGUCGCa-----CGCGUacuucau -5'
23729 3' -55.9 NC_005261.1 + 70828 0.66 0.865525
Target:  5'- cGGGCGCGcCGGCGcGCGCGUa----- -3'
miRNA:   3'- cUCCGCGU-GUCGCaCGCGUAcuucau -5'
23729 3' -55.9 NC_005261.1 + 46856 0.66 0.865525
Target:  5'- uGGGCGUACAGgGUGgGgAaGAAGg- -3'
miRNA:   3'- cUCCGCGUGUCgCACgCgUaCUUCau -5'
23729 3' -55.9 NC_005261.1 + 94260 0.66 0.865525
Target:  5'- -cGGCGCAgGGCG-GCGCcgcGAGGc- -3'
miRNA:   3'- cuCCGCGUgUCGCaCGCGua-CUUCau -5'
23729 3' -55.9 NC_005261.1 + 13293 0.66 0.865525
Target:  5'- cGGGGCGCA-GGUGUGCGacgGggGc- -3'
miRNA:   3'- -CUCCGCGUgUCGCACGCguaCuuCau -5'
23729 3' -55.9 NC_005261.1 + 45625 0.66 0.865525
Target:  5'- -cGGCGCggcGCGGCGggcccGCGCcgGAgcAGUGc -3'
miRNA:   3'- cuCCGCG---UGUCGCa----CGCGuaCU--UCAU- -5'
23729 3' -55.9 NC_005261.1 + 73710 0.66 0.84964
Target:  5'- -uGGCGCAggaccgcgguCGGCGUGCGCGcuugcgcgcgGggGUc -3'
miRNA:   3'- cuCCGCGU----------GUCGCACGCGUa---------CuuCAu -5'
23729 3' -55.9 NC_005261.1 + 72450 0.66 0.84964
Target:  5'- gGGGGCGCccGCGGCGaGCGCGgcGAGc- -3'
miRNA:   3'- -CUCCGCG--UGUCGCaCGCGUacUUCau -5'
23729 3' -55.9 NC_005261.1 + 135774 0.66 0.84964
Target:  5'- -cGGCGCAgAGCGcGUGCcgcugucgGAGGUGa -3'
miRNA:   3'- cuCCGCGUgUCGCaCGCGua------CUUCAU- -5'
23729 3' -55.9 NC_005261.1 + 90797 0.66 0.84138
Target:  5'- -cGGCGCGCGcuaccGCGUGCGC-UGGu--- -3'
miRNA:   3'- cuCCGCGUGU-----CGCACGCGuACUucau -5'
23729 3' -55.9 NC_005261.1 + 66618 0.66 0.84138
Target:  5'- -uGGCGC---GCGUGCGCAUGGc--- -3'
miRNA:   3'- cuCCGCGuguCGCACGCGUACUucau -5'
23729 3' -55.9 NC_005261.1 + 75222 0.66 0.84138
Target:  5'- -cGGCGCugcagucCAGCGgGCGCAUGuacGUGg -3'
miRNA:   3'- cuCCGCGu------GUCGCaCGCGUACuu-CAU- -5'
23729 3' -55.9 NC_005261.1 + 127633 0.66 0.84138
Target:  5'- -cGGaCGCgACGGCGgcgGCGCcgGggGg- -3'
miRNA:   3'- cuCC-GCG-UGUCGCa--CGCGuaCuuCau -5'
23729 3' -55.9 NC_005261.1 + 83679 0.66 0.84138
Target:  5'- uGGGCGCGCAGCGcGcCGCc-GAGGc- -3'
miRNA:   3'- cUCCGCGUGUCGCaC-GCGuaCUUCau -5'
23729 3' -55.9 NC_005261.1 + 105377 0.66 0.832919
Target:  5'- -cGGCGCGCGcGgGUGCGCGcUGAc--- -3'
miRNA:   3'- cuCCGCGUGU-CgCACGCGU-ACUucau -5'
23729 3' -55.9 NC_005261.1 + 69536 0.67 0.824264
Target:  5'- cGGGCGCugGcGCGcGCGC-UGggGa- -3'
miRNA:   3'- cUCCGCGugU-CGCaCGCGuACuuCau -5'
23729 3' -55.9 NC_005261.1 + 46503 0.67 0.824264
Target:  5'- cGGGGCGCAgccCGGCGUcGCGCAg------ -3'
miRNA:   3'- -CUCCGCGU---GUCGCA-CGCGUacuucau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.