miRNA display CGI


Results 1 - 20 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23729 5' -57.8 NC_005261.1 + 72664 0.66 0.864317
Target:  5'- cGGgcCCCCCCGGcgucaucuccCGCGCGaaccGGCGcGCc -3'
miRNA:   3'- -CCauGGGGGGCUa---------GCGCGU----CUGCaCG- -5'
23729 5' -57.8 NC_005261.1 + 72224 0.66 0.864317
Target:  5'- uGGUGuCCCgCCGGccggcggugCGCGCAaagucGACGUGa -3'
miRNA:   3'- -CCAU-GGGgGGCUa--------GCGCGU-----CUGCACg -5'
23729 5' -57.8 NC_005261.1 + 43769 0.66 0.864317
Target:  5'- aGGUGCUCgUgGGgcggCGCGCGGAgG-GCg -3'
miRNA:   3'- -CCAUGGGgGgCUa---GCGCGUCUgCaCG- -5'
23729 5' -57.8 NC_005261.1 + 23705 0.66 0.864317
Target:  5'- --gGCCCgCCCGGUCGgGUGGcaaGCGggugGCc -3'
miRNA:   3'- ccaUGGG-GGGCUAGCgCGUC---UGCa---CG- -5'
23729 5' -57.8 NC_005261.1 + 117699 0.66 0.856834
Target:  5'- aGGccgGCCCUgaggCCGG-CGCGCGGGCccGCa -3'
miRNA:   3'- -CCa--UGGGG----GGCUaGCGCGUCUGcaCG- -5'
23729 5' -57.8 NC_005261.1 + 84264 0.66 0.856834
Target:  5'- --gGCCCCCgGcAUgGCGCAG--GUGCc -3'
miRNA:   3'- ccaUGGGGGgC-UAgCGCGUCugCACG- -5'
23729 5' -57.8 NC_005261.1 + 131574 0.66 0.852249
Target:  5'- cGGcUGCCCCCCGcgacggccgaggccuA-CGCGCGcGCGcGCa -3'
miRNA:   3'- -CC-AUGGGGGGC---------------UaGCGCGUcUGCaCG- -5'
23729 5' -57.8 NC_005261.1 + 97552 0.66 0.849155
Target:  5'- cGGUGCCggcccguccgCCCgggguuggcuCGGUgGCGCGGGCGgagcggGCg -3'
miRNA:   3'- -CCAUGG----------GGG----------GCUAgCGCGUCUGCa-----CG- -5'
23729 5' -57.8 NC_005261.1 + 125654 0.66 0.849155
Target:  5'- cGGU-CCCCCagcagCGCGuCAuACGUGCc -3'
miRNA:   3'- -CCAuGGGGGgcua-GCGC-GUcUGCACG- -5'
23729 5' -57.8 NC_005261.1 + 17277 0.66 0.841287
Target:  5'- aGUGCaCCCCCGAcCGC-CcGACGagGCu -3'
miRNA:   3'- cCAUG-GGGGGCUaGCGcGuCUGCa-CG- -5'
23729 5' -57.8 NC_005261.1 + 67938 0.66 0.841287
Target:  5'- uGUcCCCCCCGccggcccgcUCGCGCGGcCGccGCg -3'
miRNA:   3'- cCAuGGGGGGCu--------AGCGCGUCuGCa-CG- -5'
23729 5' -57.8 NC_005261.1 + 119868 0.66 0.841287
Target:  5'- --cGCUCCCUGAcCGcCGCAGccgaggGCGUGUa -3'
miRNA:   3'- ccaUGGGGGGCUaGC-GCGUC------UGCACG- -5'
23729 5' -57.8 NC_005261.1 + 31997 0.66 0.841287
Target:  5'- cGGUGCCCgugCCGccgCGCgaguaccgGCAGcGCGUGCu -3'
miRNA:   3'- -CCAUGGGg--GGCua-GCG--------CGUC-UGCACG- -5'
23729 5' -57.8 NC_005261.1 + 102450 0.66 0.841287
Target:  5'- --cGCCgCCCGGccucggCGCGCAGGCGc-- -3'
miRNA:   3'- ccaUGGgGGGCUa-----GCGCGUCUGCacg -5'
23729 5' -57.8 NC_005261.1 + 99435 0.66 0.841287
Target:  5'- -cUGCUCCCCG-UCGgGCGGAagaGcGCg -3'
miRNA:   3'- ccAUGGGGGGCuAGCgCGUCUg--CaCG- -5'
23729 5' -57.8 NC_005261.1 + 68406 0.66 0.838891
Target:  5'- gGGUACCacgaCaCCGAgcgGCGCGuccugcaccuguucGACGUGCc -3'
miRNA:   3'- -CCAUGGg---G-GGCUag-CGCGU--------------CUGCACG- -5'
23729 5' -57.8 NC_005261.1 + 90217 0.66 0.833237
Target:  5'- cGGaGCgCCCUCGcgCG-GCGGGCGgGCg -3'
miRNA:   3'- -CCaUG-GGGGGCuaGCgCGUCUGCaCG- -5'
23729 5' -57.8 NC_005261.1 + 134530 0.66 0.833237
Target:  5'- --cAgCUgCUGggCGCGCAGACGUGa -3'
miRNA:   3'- ccaUgGGgGGCuaGCGCGUCUGCACg -5'
23729 5' -57.8 NC_005261.1 + 137679 0.66 0.833237
Target:  5'- cGGgGCCCCCCaccgccccUCGUGCAG-CGgGCc -3'
miRNA:   3'- -CCaUGGGGGGcu------AGCGCGUCuGCaCG- -5'
23729 5' -57.8 NC_005261.1 + 108540 0.66 0.833237
Target:  5'- cGGUaggccaGCgCCgCCGAcaCGCGCAcgucgugcGACGUGCg -3'
miRNA:   3'- -CCA------UGgGG-GGCUa-GCGCGU--------CUGCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.