miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2373 3' -58.5 NC_001416.1 + 5538 1.12 0.000233
Target:  5'- cAGGCACGCGUGCUGGCAGAAACCCCCg -3'
miRNA:   3'- -UCCGUGCGCACGACCGUCUUUGGGGG- -5'
2373 3' -58.5 NC_001416.1 + 16961 0.72 0.199623
Target:  5'- cGGUgGCGUGUGCUGGCGGuGAACagccagaCCCg -3'
miRNA:   3'- uCCG-UGCGCACGACCGUC-UUUGg------GGG- -5'
2373 3' -58.5 NC_001416.1 + 21442 0.7 0.279388
Target:  5'- -aGCACGaccGCUGGCGGGuuUCCCCu -3'
miRNA:   3'- ucCGUGCgcaCGACCGUCUuuGGGGG- -5'
2373 3' -58.5 NC_001416.1 + 5598 0.69 0.348256
Target:  5'- -aGCACGCGUGCUGuucuucGCGuccguGAGCCUCCu -3'
miRNA:   3'- ucCGUGCGCACGAC------CGUc----UUUGGGGG- -5'
2373 3' -58.5 NC_001416.1 + 5975 0.67 0.40875
Target:  5'- cGGCACGUuccguuugaggauGUGCucUGGcCGGAGGCUgCCa -3'
miRNA:   3'- uCCGUGCG-------------CACG--ACC-GUCUUUGGgGG- -5'
2373 3' -58.5 NC_001416.1 + 1362 0.67 0.418983
Target:  5'- gAGGCACcugucagauugaGCGUGCaGcCAGuGAAUCCCCg -3'
miRNA:   3'- -UCCGUG------------CGCACGaCcGUC-UUUGGGGG- -5'
2373 3' -58.5 NC_001416.1 + 33009 0.67 0.437981
Target:  5'- cGGGCGaGC-UGCUGGUAGuGACgCgCCCa -3'
miRNA:   3'- -UCCGUgCGcACGACCGUCuUUG-G-GGG- -5'
2373 3' -58.5 NC_001416.1 + 9258 0.66 0.508079
Target:  5'- cGGGCAUccacgccaGCGUgaaGCUgguaucuccGGCAGAuuucuGCCCCUg -3'
miRNA:   3'- -UCCGUG--------CGCA---CGA---------CCGUCUu----UGGGGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.