miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2373 5' -54.4 NC_001416.1 + 5573 1.11 0.000696
Target:  5'- cGUGAAAACGGCCCGCCGCAUUCUGGCc -3'
miRNA:   3'- -CACUUUUGCCGGGCGGCGUAAGACCG- -5'
2373 5' -54.4 NC_001416.1 + 472 0.7 0.48791
Target:  5'- cUGGAGAucugccucgcUGGCCUGCCGCAgUUCUucaaccucccGGCg -3'
miRNA:   3'- cACUUUU----------GCCGGGCGGCGU-AAGA----------CCG- -5'
2373 5' -54.4 NC_001416.1 + 36743 0.69 0.509036
Target:  5'- uGUGGu--CGGCCCGaaaacaGUUCUGGCa -3'
miRNA:   3'- -CACUuuuGCCGGGCggcg--UAAGACCG- -5'
2373 5' -54.4 NC_001416.1 + 17422 0.68 0.619139
Target:  5'- aGUGAcuucuGCGGUCagguGCUGCAccgCUGGCg -3'
miRNA:   3'- -CACUuu---UGCCGGg---CGGCGUaa-GACCG- -5'
2373 5' -54.4 NC_001416.1 + 8017 0.67 0.641593
Target:  5'- -aGcAAAACGGCggugccuggugCCGCCGCAa--UGGCc -3'
miRNA:   3'- caC-UUUUGCCG-----------GGCGGCGUaagACCG- -5'
2373 5' -54.4 NC_001416.1 + 47553 0.67 0.652812
Target:  5'- -aGu--GCGGuCCUGCUgGCAUUCUGGa -3'
miRNA:   3'- caCuuuUGCC-GGGCGG-CGUAAGACCg -5'
2373 5' -54.4 NC_001416.1 + 5493 0.66 0.719313
Target:  5'- ------cCGGCUgCGCCGCg--CUGGCg -3'
miRNA:   3'- cacuuuuGCCGG-GCGGCGuaaGACCG- -5'
2373 5' -54.4 NC_001416.1 + 3586 0.66 0.707287
Target:  5'- cGUGAAugaacgaGGCGcGCCCGCCGgGUaacUCacggGGUa -3'
miRNA:   3'- -CACUU-------UUGC-CGGGCGGCgUA---AGa---CCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.