miRNA display CGI


Results 1 - 20 of 270 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23730 3' -63.3 NC_005261.1 + 20987 0.66 0.565498
Target:  5'- cGCCCuacccccuuagacgCGCGCcuuGGGGGCGUgacaCCGAg -3'
miRNA:   3'- aCGGGua------------GCGCGu--CCUCCGCG----GGCUg -5'
23730 3' -63.3 NC_005261.1 + 130582 0.66 0.564525
Target:  5'- aGCgCCGcCGCGCGGccccGCGCCUGGCc -3'
miRNA:   3'- aCG-GGUaGCGCGUCcuc-CGCGGGCUG- -5'
23730 3' -63.3 NC_005261.1 + 80624 0.66 0.564525
Target:  5'- aGCCC-UCGauuuGCuGGAaGCGCuCCGGCg -3'
miRNA:   3'- aCGGGuAGCg---CGuCCUcCGCG-GGCUG- -5'
23730 3' -63.3 NC_005261.1 + 100259 0.66 0.564525
Target:  5'- aGCCCccagucggCGCGCcGGuGGCGCacgaagCGGCa -3'
miRNA:   3'- aCGGGua------GCGCGuCCuCCGCGg-----GCUG- -5'
23730 3' -63.3 NC_005261.1 + 39449 0.66 0.564525
Target:  5'- gGCCCcgagccucCGCGCGGcGcGGCGCCCc-- -3'
miRNA:   3'- aCGGGua------GCGCGUC-CuCCGCGGGcug -5'
23730 3' -63.3 NC_005261.1 + 55272 0.66 0.564525
Target:  5'- cGCCCccuggCGCGCcGGAGGCggggGCgCUGAa -3'
miRNA:   3'- aCGGGua---GCGCGuCCUCCG----CG-GGCUg -5'
23730 3' -63.3 NC_005261.1 + 122086 0.66 0.564525
Target:  5'- cGCCCG-CGCGCAGccagcAGGCguaGCCC-ACg -3'
miRNA:   3'- aCGGGUaGCGCGUCc----UCCG---CGGGcUG- -5'
23730 3' -63.3 NC_005261.1 + 88477 0.66 0.564525
Target:  5'- gGgCCGUgcCGCGCcGGAGcgcgccGCGCUCGACc -3'
miRNA:   3'- aCgGGUA--GCGCGuCCUC------CGCGGGCUG- -5'
23730 3' -63.3 NC_005261.1 + 106674 0.66 0.564525
Target:  5'- cGUCCAgcgCGCGCccGAGGgcCGCgCCGAUc -3'
miRNA:   3'- aCGGGUa--GCGCGucCUCC--GCG-GGCUG- -5'
23730 3' -63.3 NC_005261.1 + 135003 0.66 0.564525
Target:  5'- cGCCCcUgGCGCGGcGGGCccgcacgcgGCCgCGGCg -3'
miRNA:   3'- aCGGGuAgCGCGUCcUCCG---------CGG-GCUG- -5'
23730 3' -63.3 NC_005261.1 + 119983 0.66 0.564525
Target:  5'- aGCCCcggcCGaCGCuGGAGG-GCgCCGGCu -3'
miRNA:   3'- aCGGGua--GC-GCGuCCUCCgCG-GGCUG- -5'
23730 3' -63.3 NC_005261.1 + 81159 0.66 0.564525
Target:  5'- aUGCCCucCGUGUAGuu-GCGCCCGAg -3'
miRNA:   3'- -ACGGGuaGCGCGUCcucCGCGGGCUg -5'
23730 3' -63.3 NC_005261.1 + 93933 0.66 0.564525
Target:  5'- uUGCgCCGUC-CGCGGGcgccgccuccGGGCGgUCGGCc -3'
miRNA:   3'- -ACG-GGUAGcGCGUCC----------UCCGCgGGCUG- -5'
23730 3' -63.3 NC_005261.1 + 3732 0.66 0.564525
Target:  5'- cUGCCgGaCGCGCcGGcGGCGCaCCG-Cg -3'
miRNA:   3'- -ACGGgUaGCGCGuCCuCCGCG-GGCuG- -5'
23730 3' -63.3 NC_005261.1 + 56866 0.66 0.564525
Target:  5'- cGCUgAUCGCGCu---GGCGCUCGcACc -3'
miRNA:   3'- aCGGgUAGCGCGuccuCCGCGGGC-UG- -5'
23730 3' -63.3 NC_005261.1 + 106166 0.66 0.563552
Target:  5'- cGCUC--CGCGCuaauacuAGGGGGCGCCgCGcGCg -3'
miRNA:   3'- aCGGGuaGCGCG-------UCCUCCGCGG-GC-UG- -5'
23730 3' -63.3 NC_005261.1 + 103817 0.66 0.554818
Target:  5'- cGCCCGccgccagcagcUCGCGgAGGAGcuCGCCCu-- -3'
miRNA:   3'- aCGGGU-----------AGCGCgUCCUCc-GCGGGcug -5'
23730 3' -63.3 NC_005261.1 + 59461 0.66 0.554818
Target:  5'- gGCCgCG--GCGuCGGGGGGCaGCgCCGGCg -3'
miRNA:   3'- aCGG-GUagCGC-GUCCUCCG-CG-GGCUG- -5'
23730 3' -63.3 NC_005261.1 + 74958 0.66 0.554818
Target:  5'- cGCUCggCGCGCucGAGGCcgcgcGCCCG-Cg -3'
miRNA:   3'- aCGGGuaGCGCGucCUCCG-----CGGGCuG- -5'
23730 3' -63.3 NC_005261.1 + 4045 0.66 0.554818
Target:  5'- cGCCCAcagcgcguUCuGCGCGGccauGGCGucCCCGACc -3'
miRNA:   3'- aCGGGU--------AG-CGCGUCcu--CCGC--GGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.