miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23730 5' -56.9 NC_005261.1 + 70538 0.66 0.876543
Target:  5'- ---gGCGGCGCCcgCGccccacccgccgcaGGGCGCCGc -3'
miRNA:   3'- cacaUGCUGUGGuaGCa-------------CCCGCGGCa -5'
23730 5' -56.9 NC_005261.1 + 88750 0.66 0.873655
Target:  5'- -gGUG-GACGCCAUgGUGgcGGCGCUGc -3'
miRNA:   3'- caCAUgCUGUGGUAgCAC--CCGCGGCa -5'
23730 5' -56.9 NC_005261.1 + 85993 0.66 0.873655
Target:  5'- --cUGCGcCGCCGaCG-GGGCGUCGUg -3'
miRNA:   3'- cacAUGCuGUGGUaGCaCCCGCGGCA- -5'
23730 5' -56.9 NC_005261.1 + 104160 0.66 0.873655
Target:  5'- ---cACcGCGCCGUcCGcGGGCGCCGc -3'
miRNA:   3'- cacaUGcUGUGGUA-GCaCCCGCGGCa -5'
23730 5' -56.9 NC_005261.1 + 61874 0.66 0.866286
Target:  5'- ---gAgGGCACCA-CGaUGGGCGCCu- -3'
miRNA:   3'- cacaUgCUGUGGUaGC-ACCCGCGGca -5'
23730 5' -56.9 NC_005261.1 + 97460 0.66 0.866286
Target:  5'- ---gGCGGCGCCgggaucgccaaaaccGUCGggggggcccuuggGGGCGCCGg -3'
miRNA:   3'- cacaUGCUGUGG---------------UAGCa------------CCCGCGGCa -5'
23730 5' -56.9 NC_005261.1 + 50989 0.66 0.866286
Target:  5'- -cGgcCGACGgCGgcgCGUGGGCGCgGc -3'
miRNA:   3'- caCauGCUGUgGUa--GCACCCGCGgCa -5'
23730 5' -56.9 NC_005261.1 + 86589 0.66 0.858707
Target:  5'- -cGgcgGCGGCGCCGUCcuuGGCGUCGg -3'
miRNA:   3'- caCa--UGCUGUGGUAGcacCCGCGGCa -5'
23730 5' -56.9 NC_005261.1 + 76692 0.66 0.858707
Target:  5'- ---gACGACGCCGgccuguucuUCGUcGGCGUCGUc -3'
miRNA:   3'- cacaUGCUGUGGU---------AGCAcCCGCGGCA- -5'
23730 5' -56.9 NC_005261.1 + 93917 0.66 0.858707
Target:  5'- ---cGCGGCGCCcgCG-GGcuuGCGCCGUc -3'
miRNA:   3'- cacaUGCUGUGGuaGCaCC---CGCGGCA- -5'
23730 5' -56.9 NC_005261.1 + 125447 0.66 0.858707
Target:  5'- ---aGCGGCGuCCAUagCGUcuaaGGGCGCCGa -3'
miRNA:   3'- cacaUGCUGU-GGUA--GCA----CCCGCGGCa -5'
23730 5' -56.9 NC_005261.1 + 120590 0.66 0.850134
Target:  5'- -cGU-CGugGCCGUCGccUGcggccucGGCGCCGUg -3'
miRNA:   3'- caCAuGCugUGGUAGC--AC-------CCGCGGCA- -5'
23730 5' -56.9 NC_005261.1 + 114043 0.66 0.842942
Target:  5'- cUGgcggACGACGCCAaggaCGUGgcgcggcucagcGGCGCCGa -3'
miRNA:   3'- cACa---UGCUGUGGUa---GCAC------------CCGCGGCa -5'
23730 5' -56.9 NC_005261.1 + 81325 0.66 0.842942
Target:  5'- -gGU-CGuCGCCGUCGUcGGG-GCCGUc -3'
miRNA:   3'- caCAuGCuGUGGUAGCA-CCCgCGGCA- -5'
23730 5' -56.9 NC_005261.1 + 90868 0.66 0.842942
Target:  5'- --cUACGACGCCGUC-UGcGCGCUGg -3'
miRNA:   3'- cacAUGCUGUGGUAGcACcCGCGGCa -5'
23730 5' -56.9 NC_005261.1 + 81369 0.66 0.842942
Target:  5'- ---gGgGGCGCCGggcUCGcuggGGGCGCCGg -3'
miRNA:   3'- cacaUgCUGUGGU---AGCa---CCCGCGGCa -5'
23730 5' -56.9 NC_005261.1 + 62295 0.66 0.842942
Target:  5'- -cGU-CGGCGCCG-CGcGGGCGCgCGg -3'
miRNA:   3'- caCAuGCUGUGGUaGCaCCCGCG-GCa -5'
23730 5' -56.9 NC_005261.1 + 33602 0.66 0.83477
Target:  5'- ---gGCGGCGCCggCGcGGGCGgCGg -3'
miRNA:   3'- cacaUGCUGUGGuaGCaCCCGCgGCa -5'
23730 5' -56.9 NC_005261.1 + 72146 0.66 0.83477
Target:  5'- -gGUGCGACugCA-CGUccgGGGUGuCCGg -3'
miRNA:   3'- caCAUGCUGugGUaGCA---CCCGC-GGCa -5'
23730 5' -56.9 NC_005261.1 + 135575 0.66 0.83477
Target:  5'- ---aAgGACcCCAUCGUGgccacggccGGCGCCGUg -3'
miRNA:   3'- cacaUgCUGuGGUAGCAC---------CCGCGGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.