Results 1 - 20 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23731 | 3' | -55.4 | NC_005261.1 | + | 105251 | 0.72 | 0.545537 |
Target: 5'- cGGCGGcaUCCGCGCgacagGCUCGGCGg- -3' miRNA: 3'- uUCGCC--AGGCGCGaca--UGAGUUGCau -5' |
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23731 | 3' | -55.4 | NC_005261.1 | + | 37101 | 0.71 | 0.618394 |
Target: 5'- -cGCGaGUCCGCGCggcUGUACUCucuGCGc- -3' miRNA: 3'- uuCGC-CAGGCGCG---ACAUGAGu--UGCau -5' |
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23731 | 3' | -55.4 | NC_005261.1 | + | 93733 | 0.71 | 0.618394 |
Target: 5'- cGGCGGcagCgCGCGCUucGUACUCGGCGg- -3' miRNA: 3'- uUCGCCa--G-GCGCGA--CAUGAGUUGCau -5' |
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23731 | 3' | -55.4 | NC_005261.1 | + | 101447 | 0.7 | 0.660431 |
Target: 5'- -cGCGGUCCaGCGCUGgcCcCAGCGc- -3' miRNA: 3'- uuCGCCAGG-CGCGACauGaGUUGCau -5' |
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23731 | 3' | -55.4 | NC_005261.1 | + | 119059 | 0.7 | 0.681342 |
Target: 5'- -cGCGG-CCGCGCgUGUGCUUu-CGUGg -3' miRNA: 3'- uuCGCCaGGCGCG-ACAUGAGuuGCAU- -5' |
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23731 | 3' | -55.4 | NC_005261.1 | + | 132942 | 0.69 | 0.722571 |
Target: 5'- -cGUGGUCCccgaGCGCUGcGC-CGACGUGg -3' miRNA: 3'- uuCGCCAGG----CGCGACaUGaGUUGCAU- -5' |
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23731 | 3' | -55.4 | NC_005261.1 | + | 30210 | 0.69 | 0.732698 |
Target: 5'- gAGGCGG-CCGCGCUGgcgGCgCGAacCGUGg -3' miRNA: 3'- -UUCGCCaGGCGCGACa--UGaGUU--GCAU- -5' |
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23731 | 3' | -55.4 | NC_005261.1 | + | 105384 | 0.69 | 0.742733 |
Target: 5'- -cGCgGGUgCGCGCUGaccacgcgccGCUCGACGUAg -3' miRNA: 3'- uuCG-CCAgGCGCGACa---------UGAGUUGCAU- -5' |
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23731 | 3' | -55.4 | NC_005261.1 | + | 65856 | 0.68 | 0.762487 |
Target: 5'- uAGCGGUCCGCGgcggcUUGUACagcccCAGCGg- -3' miRNA: 3'- uUCGCCAGGCGC-----GACAUGa----GUUGCau -5' |
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23731 | 3' | -55.4 | NC_005261.1 | + | 24433 | 0.68 | 0.781752 |
Target: 5'- -uGCGGUCCGCGgCgauggacgaggUGUGCUCcGCGc- -3' miRNA: 3'- uuCGCCAGGCGC-G-----------ACAUGAGuUGCau -5' |
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23731 | 3' | -55.4 | NC_005261.1 | + | 74158 | 0.68 | 0.791177 |
Target: 5'- cAGCGGggcaUGCGC-GUGCUCAAgGUGa -3' miRNA: 3'- uUCGCCag--GCGCGaCAUGAGUUgCAU- -5' |
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23731 | 3' | -55.4 | NC_005261.1 | + | 2661 | 0.68 | 0.809563 |
Target: 5'- cGGCGGcucccgCCGCGCUGgggACcCGGCGg- -3' miRNA: 3'- uUCGCCa-----GGCGCGACa--UGaGUUGCau -5' |
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23731 | 3' | -55.4 | NC_005261.1 | + | 67086 | 0.68 | 0.809563 |
Target: 5'- cGGGCGGUCCaugGCGCgacgcgGUGCgggCGGCGc- -3' miRNA: 3'- -UUCGCCAGG---CGCGa-----CAUGa--GUUGCau -5' |
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23731 | 3' | -55.4 | NC_005261.1 | + | 72239 | 0.68 | 0.809563 |
Target: 5'- cGGCGGUgCGCGCaa-AgUCGACGUGa -3' miRNA: 3'- uUCGCCAgGCGCGacaUgAGUUGCAU- -5' |
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23731 | 3' | -55.4 | NC_005261.1 | + | 135292 | 0.67 | 0.818506 |
Target: 5'- cGGCGGguUCCGCGCg--AC-CGGCGUGu -3' miRNA: 3'- uUCGCC--AGGCGCGacaUGaGUUGCAU- -5' |
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23731 | 3' | -55.4 | NC_005261.1 | + | 106626 | 0.67 | 0.835847 |
Target: 5'- -cGCGGagCCGCGCgacGaGCUCGGCGa- -3' miRNA: 3'- uuCGCCa-GGCGCGa--CaUGAGUUGCau -5' |
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23731 | 3' | -55.4 | NC_005261.1 | + | 71974 | 0.67 | 0.844228 |
Target: 5'- -cGCGGagCGCGCggcagGUGCgCAGCGUc -3' miRNA: 3'- uuCGCCagGCGCGa----CAUGaGUUGCAu -5' |
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23731 | 3' | -55.4 | NC_005261.1 | + | 43860 | 0.67 | 0.844228 |
Target: 5'- -cGCGG-CCGCGUcGUcCUCGGCGg- -3' miRNA: 3'- uuCGCCaGGCGCGaCAuGAGUUGCau -5' |
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23731 | 3' | -55.4 | NC_005261.1 | + | 104000 | 0.67 | 0.847523 |
Target: 5'- -cGCGGUCggccaguauggcgcgCGCGCUGUACUgcGCGc- -3' miRNA: 3'- uuCGCCAG---------------GCGCGACAUGAguUGCau -5' |
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23731 | 3' | -55.4 | NC_005261.1 | + | 127495 | 0.66 | 0.860372 |
Target: 5'- uGGCGGcugccugCCGgGC-GUACUCGGCGg- -3' miRNA: 3'- uUCGCCa------GGCgCGaCAUGAGUUGCau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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