miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23731 5' -50.5 NC_005261.1 + 54824 0.66 0.99447
Target:  5'- gUCCGCGUCAuacgcgggcaGGgcUA--GCUGCCgGCGc -3'
miRNA:   3'- -AGGUGCAGU----------UCauAUacUGACGG-CGC- -5'
23731 5' -50.5 NC_005261.1 + 64054 0.67 0.988838
Target:  5'- gCCGCGU--GGUGcgccaccGGCUGCCGCa -3'
miRNA:   3'- aGGUGCAguUCAUaua----CUGACGGCGc -5'
23731 5' -50.5 NC_005261.1 + 118209 0.67 0.988838
Target:  5'- gCCGCGcugcgCGGGgcgcUGACgGCCGCGg -3'
miRNA:   3'- aGGUGCa----GUUCauauACUGaCGGCGC- -5'
23731 5' -50.5 NC_005261.1 + 37949 0.66 0.990222
Target:  5'- gCCGCGUCGAGcggGUG-CUGCCc-- -3'
miRNA:   3'- aGGUGCAGUUCauaUACuGACGGcgc -5'
23731 5' -50.5 NC_005261.1 + 69880 0.66 0.990222
Target:  5'- aCCGgGcgCGAGUGUGUGugUuuuGCCGgGg -3'
miRNA:   3'- aGGUgCa-GUUCAUAUACugA---CGGCgC- -5'
23731 5' -50.5 NC_005261.1 + 76905 0.66 0.990222
Target:  5'- cCCACGUCGcgcuGUGcgugcugGGCcGCCGCGu -3'
miRNA:   3'- aGGUGCAGUu---CAUaua----CUGaCGGCGC- -5'
23731 5' -50.5 NC_005261.1 + 65693 0.66 0.990737
Target:  5'- gUCCACGUCcagaAAGgacggGUGACagagcgugcccaugGCCGCGc -3'
miRNA:   3'- -AGGUGCAG----UUCaua--UACUGa-------------CGGCGC- -5'
23731 5' -50.5 NC_005261.1 + 71921 0.66 0.991468
Target:  5'- -gCACGUCGuugacGUcaaaGGCUGCCGCGc -3'
miRNA:   3'- agGUGCAGUu----CAuauaCUGACGGCGC- -5'
23731 5' -50.5 NC_005261.1 + 133360 0.66 0.992585
Target:  5'- gCCGCG-CAGGgcuucGGCUGCCuGCGc -3'
miRNA:   3'- aGGUGCaGUUCauauaCUGACGG-CGC- -5'
23731 5' -50.5 NC_005261.1 + 116816 0.67 0.985617
Target:  5'- cUCUACGacgagCAGGUGUacGUGGCcguccccGCCGCGa -3'
miRNA:   3'- -AGGUGCa----GUUCAUA--UACUGa------CGGCGC- -5'
23731 5' -50.5 NC_005261.1 + 87477 0.67 0.985617
Target:  5'- -gCGCGUCAGGUuc--GGCgcgGCCGUGc -3'
miRNA:   3'- agGUGCAGUUCAuauaCUGa--CGGCGC- -5'
23731 5' -50.5 NC_005261.1 + 31646 0.67 0.981729
Target:  5'- uUCCGCGgcgcggUCGAGUAccucugccUGcGGCUgGCCGCGg -3'
miRNA:   3'- -AGGUGC------AGUUCAU--------AUaCUGA-CGGCGC- -5'
23731 5' -50.5 NC_005261.1 + 71540 0.72 0.863855
Target:  5'- gCCACcucgcgcaugGUCGAGUAcaUGUGGCUguccaGCCGCGa -3'
miRNA:   3'- aGGUG----------CAGUUCAU--AUACUGA-----CGGCGC- -5'
23731 5' -50.5 NC_005261.1 + 53515 0.72 0.886447
Target:  5'- aUCGCGcCcgAAGgcUGUGGCUGCCGUGu -3'
miRNA:   3'- aGGUGCaG--UUCauAUACUGACGGCGC- -5'
23731 5' -50.5 NC_005261.1 + 82061 0.71 0.893496
Target:  5'- gCCACGUCGccgGGUcgAcGGCgUGCCGCa -3'
miRNA:   3'- aGGUGCAGU---UCAuaUaCUG-ACGGCGc -5'
23731 5' -50.5 NC_005261.1 + 113564 0.71 0.900295
Target:  5'- aCCGCGagCAguGGUcgGUGGCcGCCGCGc -3'
miRNA:   3'- aGGUGCa-GU--UCAuaUACUGaCGGCGC- -5'
23731 5' -50.5 NC_005261.1 + 32010 0.7 0.935702
Target:  5'- gCCGCG-CGAGUAccggcagcgcGUG-CUGCCGCGg -3'
miRNA:   3'- aGGUGCaGUUCAUa---------UACuGACGGCGC- -5'
23731 5' -50.5 NC_005261.1 + 88458 0.7 0.94543
Target:  5'- gCCGCGUgAGcGUGUGggcgGGCcgUGCCGCGc -3'
miRNA:   3'- aGGUGCAgUU-CAUAUa---CUG--ACGGCGC- -5'
23731 5' -50.5 NC_005261.1 + 84980 0.69 0.958119
Target:  5'- gUCCGCGaugCGccggcgcacccAGUGcAUGACgGCCGCGg -3'
miRNA:   3'- -AGGUGCa--GU-----------UCAUaUACUGaCGGCGC- -5'
23731 5' -50.5 NC_005261.1 + 45181 0.68 0.968622
Target:  5'- aCCGCGcCGAGUGUGaGGCcaUGCCGg- -3'
miRNA:   3'- aGGUGCaGUUCAUAUaCUG--ACGGCgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.