miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23732 3' -54.9 NC_005261.1 + 48666 0.65 0.932671
Target:  5'- gAGCCgCGCGGcAACGGCgacuacgggcccGCGGGCc -3'
miRNA:   3'- gUCGGaGCGCC-UUGUCGaa----------CGCUUGc -5'
23732 3' -54.9 NC_005261.1 + 121424 0.66 0.929544
Target:  5'- -cGCCgcCGCuacGGGGCGGCgggGCGGGCa -3'
miRNA:   3'- guCGGa-GCG---CCUUGUCGaa-CGCUUGc -5'
23732 3' -54.9 NC_005261.1 + 28779 0.66 0.929544
Target:  5'- gGGCCgcggCGCGGGcgcucGCGGCcgcgGCGGAgGc -3'
miRNA:   3'- gUCGGa---GCGCCU-----UGUCGaa--CGCUUgC- -5'
23732 3' -54.9 NC_005261.1 + 34926 0.66 0.929544
Target:  5'- gCGGCCaCGCGGGggGCGGCcgGCGcGACc -3'
miRNA:   3'- -GUCGGaGCGCCU--UGUCGaaCGC-UUGc -5'
23732 3' -54.9 NC_005261.1 + 103860 0.66 0.929544
Target:  5'- gAGCCgcggcggCgGCGGGGCGGCgccGcCGGGCGg -3'
miRNA:   3'- gUCGGa------G-CGCCUUGUCGaa-C-GCUUGC- -5'
23732 3' -54.9 NC_005261.1 + 100900 0.66 0.929544
Target:  5'- gCGGCCUCGCcGcGCAccGCc-GCGAGCGu -3'
miRNA:   3'- -GUCGGAGCGcCuUGU--CGaaCGCUUGC- -5'
23732 3' -54.9 NC_005261.1 + 61021 0.66 0.929544
Target:  5'- -cGCCgUCGUGGGGCGGCaccGCGGcaGCu -3'
miRNA:   3'- guCGG-AGCGCCUUGUCGaa-CGCU--UGc -5'
23732 3' -54.9 NC_005261.1 + 23502 0.66 0.924134
Target:  5'- gGGCaggCGCGGGcccugggagcacGCGGUcggGCGAGCGg -3'
miRNA:   3'- gUCGga-GCGCCU------------UGUCGaa-CGCUUGC- -5'
23732 3' -54.9 NC_005261.1 + 3869 0.66 0.924134
Target:  5'- gCGGCCggCGagcaCGGcgcGCAGCUcgGCGAGCGc -3'
miRNA:   3'- -GUCGGa-GC----GCCu--UGUCGAa-CGCUUGC- -5'
23732 3' -54.9 NC_005261.1 + 132895 0.66 0.924134
Target:  5'- aAGCCgggcgcCGCGG-GCGGCgc-CGAGCGg -3'
miRNA:   3'- gUCGGa-----GCGCCuUGUCGaacGCUUGC- -5'
23732 3' -54.9 NC_005261.1 + 34717 0.66 0.924134
Target:  5'- gAGCCUCaGCGGu-CGGCgcccccugGCGGccGCGg -3'
miRNA:   3'- gUCGGAG-CGCCuuGUCGaa------CGCU--UGC- -5'
23732 3' -54.9 NC_005261.1 + 90123 0.66 0.924134
Target:  5'- gCGGCC-CGCGGcGAgGGCgaggagggggGCGAugGg -3'
miRNA:   3'- -GUCGGaGCGCC-UUgUCGaa--------CGCUugC- -5'
23732 3' -54.9 NC_005261.1 + 36963 0.66 0.924134
Target:  5'- -cGCCgCGCGGcGCAGagcucggUGCGGGCu -3'
miRNA:   3'- guCGGaGCGCCuUGUCga-----ACGCUUGc -5'
23732 3' -54.9 NC_005261.1 + 132591 0.66 0.918478
Target:  5'- -cGCC-CGCGGAcgccCGGCccgGCGAGCc -3'
miRNA:   3'- guCGGaGCGCCUu---GUCGaa-CGCUUGc -5'
23732 3' -54.9 NC_005261.1 + 118717 0.66 0.918478
Target:  5'- uCAGCgUCGCGGGcgggcACGGCgucGCGcuCGc -3'
miRNA:   3'- -GUCGgAGCGCCU-----UGUCGaa-CGCuuGC- -5'
23732 3' -54.9 NC_005261.1 + 71963 0.66 0.918478
Target:  5'- uCGGCgCggggCGCGGAGCGcGCggcaggUGCGcAGCGu -3'
miRNA:   3'- -GUCG-Ga---GCGCCUUGU-CGa-----ACGC-UUGC- -5'
23732 3' -54.9 NC_005261.1 + 104065 0.66 0.918478
Target:  5'- uCGGCCgcgagCGCGuc-CAGCUcgGCGGACa -3'
miRNA:   3'- -GUCGGa----GCGCcuuGUCGAa-CGCUUGc -5'
23732 3' -54.9 NC_005261.1 + 104291 0.66 0.916733
Target:  5'- gGGCCUCGCaGGcccgcgcgcgcucaAAgAGCgcGCGGACGc -3'
miRNA:   3'- gUCGGAGCG-CC--------------UUgUCGaaCGCUUGC- -5'
23732 3' -54.9 NC_005261.1 + 71791 0.66 0.912575
Target:  5'- gCAGCUgagCGCGGccCGGCccgUGgGGACGu -3'
miRNA:   3'- -GUCGGa--GCGCCuuGUCGa--ACgCUUGC- -5'
23732 3' -54.9 NC_005261.1 + 110790 0.66 0.912575
Target:  5'- -uGCUcCGgGGGACGGCggGCGAggagGCGg -3'
miRNA:   3'- guCGGaGCgCCUUGUCGaaCGCU----UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.